eF-site ID 4nqk-ABCDEFGHIJ PDB Code 4nqk Chain A, B, C, D, E, F, G, H, I, J click to enlarge Title Structure of an Ubiquitin complex Classification Hydrolase/Apoptosis Compound Probable ATP-dependent RNA helicase DDX58 Source Homo sapiens (Human) (UBC_HUMAN) Sequence A:  MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQY IQAEKNNKGPMEAATLFLKFLLELQEEGWFRGFLDALDHA GYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLL RSDKENWPKTLKLALEKERNKFSELWIV B:  MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQY IQAEKNNKGPMEAATLFLKFLLELQEEGWFRGFLDALDHA GYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLL RSDKENWPKTLKLALEKERNKFSELWIV C:  MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQY IQAEKNNKGPMEAATLFLKFLLELQEEGWFRGFLDALDHA GYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLL RSDKENWPKTLKLALEKERNKFSELWIV D:  MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQY IQAEKNNKGPMEAATLFLKFLLELQEEGWFRGFLDALDHA GYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLL RSDKENWPKTLKLALEKERNKFSELWIV E:  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR F:  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL G:  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ QRLIFAGKQLEDGRTLSDYNIQKESTLHLVL H:  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG I:  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ QRLIFAGKQLEDGRTLSDYNIQKESTLHLVL J:  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL Description Functional site 1) chain A residue 96 type CROSSLNK sequence K description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) source Swiss-Prot : SWS_FT_FI2 2) chain B residue 96 type CROSSLNK sequence K description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) source Swiss-Prot : SWS_FT_FI2 3) chain C residue 96 type CROSSLNK sequence K description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) source Swiss-Prot : SWS_FT_FI2 4) chain D residue 96 type CROSSLNK sequence K description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) source Swiss-Prot : SWS_FT_FI2 5) chain A residue 172 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855, ECO:0000269|PubMed:28469175 source Swiss-Prot : SWS_FT_FI5 6) chain B residue 172 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855, ECO:0000269|PubMed:28469175 source Swiss-Prot : SWS_FT_FI5 7) chain C residue 172 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855, ECO:0000269|PubMed:28469175 source Swiss-Prot : SWS_FT_FI5 8) chain D residue 172 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855, ECO:0000269|PubMed:28469175 source Swiss-Prot : SWS_FT_FI5 9) chain E residue 27-52 type prosite sequence KAKIQDKEGIPPDQQRLIFAGKQLED description UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD source prosite : PS00299 10) chain A residue 181 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:26471729 source Swiss-Prot : SWS_FT_FI3 11) chain B residue 181 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:26471729 source Swiss-Prot : SWS_FT_FI3 12) chain C residue 181 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:26471729 source Swiss-Prot : SWS_FT_FI3 13) chain D residue 181 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:26471729 source Swiss-Prot : SWS_FT_FI3 14) chain A residue 154 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855 source Swiss-Prot : SWS_FT_FI4 15) chain A residue 164 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855 source Swiss-Prot : SWS_FT_FI4 16) chain B residue 154 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855 source Swiss-Prot : SWS_FT_FI4 17) chain B residue 164 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855 source Swiss-Prot : SWS_FT_FI4 18) chain C residue 154 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855 source Swiss-Prot : SWS_FT_FI4 19) chain C residue 164 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855 source Swiss-Prot : SWS_FT_FI4 20) chain D residue 154 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855 source Swiss-Prot : SWS_FT_FI4 21) chain D residue 164 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855 source Swiss-Prot : SWS_FT_FI4

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