eF-site ID 4nqk-A
PDB Code 4nqk
Chain A

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Title Structure of an Ubiquitin complex
Classification Hydrolase/Apoptosis
Compound Probable ATP-dependent RNA helicase DDX58
Source Homo sapiens (Human) (UBC_HUMAN)
Sequence A:  MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQY
IQAEKNNKGPMEAATLFLKFLLELQEEGWFRGFLDALDHA
GYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP
TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLL
RSDKENWPKTLKLALEKERNKFSELWIV
Description


Functional site

1) chain A
residue 96
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI2

2) chain A
residue 172
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855, ECO:0000269|PubMed:28469175
source Swiss-Prot : SWS_FT_FI5

3) chain A
residue 181
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:26471729
source Swiss-Prot : SWS_FT_FI3

4) chain A
residue 154
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855
source Swiss-Prot : SWS_FT_FI4

5) chain A
residue 164
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19484123, ECO:0000269|PubMed:24755855
source Swiss-Prot : SWS_FT_FI4


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