|
eF-site ID
|
4nck-AB |
PDB Code
|
4nck |
Chain
|
A, B |
|
click to enlarge
|
|
Title
|
Crystal Structure of Pyrococcus furiosis Rad50 R797G mutation |
Classification
|
DNA BINDING PROTEIN |
Compound
|
DNA double-strand break repair Rad50 ATPase |
Source
|
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (RAD50_PYRFU) |
|
Sequence
|
A: |
MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLL
DAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGT
KYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAIS
AFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREV
LNKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVV
RAEENKVRLFVVWEGKERPLTFLSGGEGIALGLAFRLAMS
LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ
VILVSHDEELKDAADHVIRISLENGSSKVEVVS
|
B: |
MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLL
DAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGT
KYRITRRFLEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL
IPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNIEKV
KKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEE
NKVRLFVVWEGKERPLTFLSGGEGIALGLAFRLAMSLYLA
GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV
SHDEELKDAADHVIRISLENGSSKVEVVS
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
B |
residue |
50 |
type |
|
sequence |
P
|
description |
BINDING SITE FOR RESIDUE SO4 B 901
|
source |
: AC1
|
|
2)
|
chain |
B |
residue |
51 |
type |
|
sequence |
L
|
description |
BINDING SITE FOR RESIDUE SO4 B 901
|
source |
: AC1
|
|
3)
|
chain |
B |
residue |
52 |
type |
|
sequence |
R
|
description |
BINDING SITE FOR RESIDUE SO4 B 901
|
source |
: AC1
|
|
4)
|
chain |
B |
residue |
53 |
type |
|
sequence |
I
|
description |
BINDING SITE FOR RESIDUE SO4 B 901
|
source |
: AC1
|
|
5)
|
chain |
B |
residue |
56 |
type |
|
sequence |
I
|
description |
BINDING SITE FOR RESIDUE SO4 B 901
|
source |
: AC1
|
|
6)
|
chain |
B |
residue |
57 |
type |
|
sequence |
K
|
description |
BINDING SITE FOR RESIDUE SO4 B 901
|
source |
: AC1
|
|
7)
|
chain |
B |
residue |
58 |
type |
|
sequence |
K
|
description |
BINDING SITE FOR RESIDUE SO4 B 901
|
source |
: AC1
|
|
8)
|
chain |
B |
residue |
35 |
type |
|
sequence |
G
|
description |
BINDING SITE FOR RESIDUE CL B 902
|
source |
: AC2
|
|
9)
|
chain |
B |
residue |
36 |
type |
|
sequence |
K
|
description |
BINDING SITE FOR RESIDUE CL B 902
|
source |
: AC2
|
|
10)
|
chain |
B |
residue |
37 |
type |
|
sequence |
S
|
description |
BINDING SITE FOR RESIDUE CL B 902
|
source |
: AC2
|
|
11)
|
chain |
B |
residue |
758 |
type |
|
sequence |
E
|
description |
BINDING SITE FOR RESIDUE MG B 903
|
source |
: AC3
|
|
12)
|
chain |
A |
residue |
12 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0000269|PubMed:24493214, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT, ECO:0007744|PDB:3QKU, ECO:0007744|PDB:4NCJ
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
13)
|
chain |
A |
residue |
32 |
type |
BINDING |
sequence |
N
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0000269|PubMed:24493214, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT, ECO:0007744|PDB:3QKU, ECO:0007744|PDB:4NCJ
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
14)
|
chain |
A |
residue |
60 |
type |
BINDING |
sequence |
E
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0000269|PubMed:24493214, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT, ECO:0007744|PDB:3QKU, ECO:0007744|PDB:4NCJ
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
15)
|
chain |
B |
residue |
12 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0000269|PubMed:24493214, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT, ECO:0007744|PDB:3QKU, ECO:0007744|PDB:4NCJ
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
16)
|
chain |
B |
residue |
32 |
type |
BINDING |
sequence |
N
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0000269|PubMed:24493214, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT, ECO:0007744|PDB:3QKU, ECO:0007744|PDB:4NCJ
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
17)
|
chain |
B |
residue |
60 |
type |
BINDING |
sequence |
E
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0000269|PubMed:24493214, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT, ECO:0007744|PDB:3QKU, ECO:0007744|PDB:4NCJ
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
18)
|
chain |
A |
residue |
140 |
type |
BINDING |
sequence |
Q
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT, ECO:0007744|PDB:3QKU
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
19)
|
chain |
B |
residue |
140 |
type |
BINDING |
sequence |
Q
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT, ECO:0007744|PDB:3QKU
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
20)
|
chain |
A |
residue |
763 |
type |
BINDING |
sequence |
K
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
21)
|
chain |
A |
residue |
791 |
type |
BINDING |
sequence |
F
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
22)
|
chain |
B |
residue |
763 |
type |
BINDING |
sequence |
K
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
23)
|
chain |
B |
residue |
791 |
type |
BINDING |
sequence |
F
|
description |
BINDING => ECO:0000269|PubMed:10892749, ECO:0000269|PubMed:21441914, ECO:0007744|PDB:1F2U, ECO:0007744|PDB:3QKT
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
|
|