eF-site ID 4msq-ABCD PDB Code 4msq Chain A, B, C, D click to enlarge Title Crystal structure of Schizosaccharomyces pombe AMSH-like protease sst2 catalytic domain bound to ubiquitin Classification HYDROLASE/PROTEIN BINDING Compound AMSH-like protease sst2 Source Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (UBC_HUMAN) Sequence A:  KIHAYTEGGKPLRTIYLPKLLKKVFLDVVKPNTKKNLETC GILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEF QDKHNLLTLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEA IAIVMAPSKNTSGIFRLLDPEGLQTIVKCRKPGLFHPHEG KVYTMVAQPGHVREINSKLQVVDLR B:  SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG C:  FKIHAYTEGGKPLRTIYLPKLLKKVFLDVVKPNTKKNLET CGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFE FQDKHNLLTLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPE AIAIVMAPSKNTSGIFRLLDPEGLQTIVKCRKPGLFHPHE GKVYTMVAQPGHVREINSKLQVVDLR D:  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Description Functional site 1) chain A residue 356 type sequence H description BINDING SITE FOR RESIDUE ZN A 501 source : AC1 2) chain A residue 397 type sequence C description BINDING SITE FOR RESIDUE ZN A 501 source : AC1 3) chain A residue 404 type sequence H description BINDING SITE FOR RESIDUE ZN A 501 source : AC1 4) chain A residue 406 type sequence H description BINDING SITE FOR RESIDUE ZN A 501 source : AC1 5) chain A residue 341 type sequence H description BINDING SITE FOR RESIDUE ZN A 502 source : AC2 6) chain A residue 343 type sequence H description BINDING SITE FOR RESIDUE ZN A 502 source : AC2 7) chain A residue 354 type sequence D description BINDING SITE FOR RESIDUE ZN A 502 source : AC2 8) chain B residue 76 type sequence G description BINDING SITE FOR RESIDUE ZN A 502 source : AC2 9) chain A residue 315 type sequence D description BINDING SITE FOR RESIDUE EDO A 503 source : AC3 10) chain A residue 346 type sequence Q description BINDING SITE FOR RESIDUE EDO A 503 source : AC3 11) chain A residue 349 type sequence F description BINDING SITE FOR RESIDUE EDO A 503 source : AC3 12) chain B residue 76 type sequence G description BINDING SITE FOR RESIDUE EDO A 503 source : AC3 13) chain A residue 290 type sequence I description BINDING SITE FOR RESIDUE EDO A 504 source : AC4 14) chain A residue 325 type sequence L description BINDING SITE FOR RESIDUE EDO A 504 source : AC4 15) chain A residue 329 type sequence Q description BINDING SITE FOR RESIDUE EDO A 504 source : AC4 16) chain A residue 336 type sequence T description BINDING SITE FOR RESIDUE EDO A 504 source : AC4 17) chain A residue 361 type sequence Y description BINDING SITE FOR RESIDUE EDO A 504 source : AC4 18) chain B residue 8 type sequence L description BINDING SITE FOR RESIDUE EDO A 504 source : AC4 19) chain B residue 71 type sequence L description BINDING SITE FOR RESIDUE EDO A 504 source : AC4 20) chain A residue 281 type sequence T description BINDING SITE FOR RESIDUE EDO A 505 source : AC5 21) chain A residue 282 type sequence K description BINDING SITE FOR RESIDUE EDO A 505 source : AC5 22) chain A residue 258 type sequence K description BINDING SITE FOR RESIDUE EDO A 506 source : AC6 23) chain A residue 362 type sequence Q description BINDING SITE FOR RESIDUE EDO A 506 source : AC6 24) chain A residue 366 type sequence P description BINDING SITE FOR RESIDUE EDO A 506 source : AC6 25) chain A residue 387 type sequence D description BINDING SITE FOR RESIDUE EDO A 506 source : AC6 26) chain A residue 388 type sequence P description BINDING SITE FOR RESIDUE EDO A 507 source : AC7 27) chain A residue 392 type sequence Q description BINDING SITE FOR RESIDUE EDO A 507 source : AC7 28) chain B residue 7 type sequence T description BINDING SITE FOR RESIDUE EDO B 101 source : AC8 29) chain B residue 8 type sequence L description BINDING SITE FOR RESIDUE EDO B 101 source : AC8 30) chain B residue 69 type sequence L description BINDING SITE FOR RESIDUE EDO B 101 source : AC8 31) chain B residue 70 type sequence V description BINDING SITE FOR RESIDUE EDO B 101 source : AC8 32) chain B residue 71 type sequence L description BINDING SITE FOR RESIDUE EDO B 101 source : AC8 33) chain B residue 44 type sequence I description BINDING SITE FOR RESIDUE EDO B 102 source : AC9 34) chain B residue 46 type sequence A description BINDING SITE FOR RESIDUE EDO B 102 source : AC9 35) chain B residue 47 type sequence G description BINDING SITE FOR RESIDUE EDO B 102 source : AC9 36) chain B residue 68 type sequence H description BINDING SITE FOR RESIDUE EDO B 102 source : AC9 37) chain C residue 356 type sequence H description BINDING SITE FOR RESIDUE ZN C 501 source : BC1 38) chain C residue 397 type sequence C description BINDING SITE FOR RESIDUE ZN C 501 source : BC1 39) chain C residue 404 type sequence H description BINDING SITE FOR RESIDUE ZN C 501 source : BC1 40) chain C residue 406 type sequence H description BINDING SITE FOR RESIDUE ZN C 501 source : BC1 41) chain C residue 341 type sequence H description BINDING SITE FOR RESIDUE ZN C 502 source : BC2 42) chain C residue 343 type sequence H description BINDING SITE FOR RESIDUE ZN C 502 source : BC2 43) chain C residue 354 type sequence D description BINDING SITE FOR RESIDUE ZN C 502 source : BC2 44) chain D residue 76 type sequence G description BINDING SITE FOR RESIDUE ZN C 502 source : BC2 45) chain C residue 409 type sequence K description BINDING SITE FOR RESIDUE PO4 C 503 source : BC3 46) chain C residue 412 type sequence T description BINDING SITE FOR RESIDUE PO4 C 503 source : BC3 47) chain C residue 413 type sequence M description BINDING SITE FOR RESIDUE PO4 C 503 source : BC3 48) chain C residue 382 type sequence I description BINDING SITE FOR RESIDUE EDO C 504 source : BC4 49) chain C residue 416 type sequence Q description BINDING SITE FOR RESIDUE EDO C 504 source : BC4 50) chain C residue 422 type sequence E description BINDING SITE FOR RESIDUE EDO C 504 source : BC4 51) chain A residue 313 type sequence T description BINDING SITE FOR RESIDUE EDO C 505 source : BC5 52) chain A residue 315 type sequence D description BINDING SITE FOR RESIDUE EDO C 505 source : BC5 53) chain C residue 311 type sequence E description BINDING SITE FOR RESIDUE EDO C 505 source : BC5 54) chain C residue 316 type sequence T description BINDING SITE FOR RESIDUE EDO C 505 source : BC5 55) chain C residue 317 type sequence C description BINDING SITE FOR RESIDUE EDO C 505 source : BC5 56) chain C residue 318 type sequence G description BINDING SITE FOR RESIDUE EDO C 505 source : BC5 57) chain D residue 74 type sequence R description BINDING SITE FOR RESIDUE EDO C 505 source : BC5 58) chain C residue 325 type sequence L description BINDING SITE FOR RESIDUE EDO C 506 source : BC6 59) chain C residue 329 type sequence Q description BINDING SITE FOR RESIDUE EDO C 506 source : BC6 60) chain C residue 336 type sequence T description BINDING SITE FOR RESIDUE EDO C 506 source : BC6 61) chain C residue 361 type sequence Y description BINDING SITE FOR RESIDUE EDO C 506 source : BC6 62) chain D residue 8 type sequence L description BINDING SITE FOR RESIDUE EDO C 506 source : BC6 63) chain D residue 71 type sequence L description BINDING SITE FOR RESIDUE EDO C 506 source : BC6 64) chain C residue 315 type sequence D description BINDING SITE FOR RESIDUE EDO C 507 source : BC7 65) chain C residue 346 type sequence Q description BINDING SITE FOR RESIDUE EDO C 507 source : BC7 66) chain C residue 349 type sequence F description BINDING SITE FOR RESIDUE EDO C 507 source : BC7 67) chain D residue 76 type sequence G description BINDING SITE FOR RESIDUE EDO C 507 source : BC7 68) chain D residue 7 type sequence T description BINDING SITE FOR RESIDUE EDO D 101 source : BC8 69) chain D residue 8 type sequence L description BINDING SITE FOR RESIDUE EDO D 101 source : BC8 70) chain D residue 69 type sequence L description BINDING SITE FOR RESIDUE EDO D 101 source : BC8 71) chain D residue 70 type sequence V description BINDING SITE FOR RESIDUE EDO D 101 source : BC8 72) chain D residue 71 type sequence L description BINDING SITE FOR RESIDUE EDO D 101 source : BC8 73) chain C residue 326 type sequence F description BINDING SITE FOR RESIDUE EDO D 102 source : BC9 74) chain C residue 330 type sequence D description BINDING SITE FOR RESIDUE EDO D 102 source : BC9 75) chain D residue 6 type sequence K description BINDING SITE FOR RESIDUE EDO D 102 source : BC9 76) chain D residue 7 type sequence T description BINDING SITE FOR RESIDUE EDO D 102 source : BC9 77) chain D residue 8 type sequence L description BINDING SITE FOR RESIDUE EDO D 102 source : BC9 78) chain D residue 68 type sequence H description BINDING SITE FOR RESIDUE EDO D 102 source : BC9 79) chain B residue 27-52 type prosite sequence KAKIQDKEGIPPDQQRLIFAGKQLED description UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD source prosite : PS00299 80) chain A residue 341 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU01182 source Swiss-Prot : SWS_FT_FI1 81) chain A residue 343 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU01182 source Swiss-Prot : SWS_FT_FI1 82) chain A residue 354 type BINDING sequence D description BINDING => ECO:0000255|PROSITE-ProRule:PRU01182 source Swiss-Prot : SWS_FT_FI1 83) chain C residue 341 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU01182 source Swiss-Prot : SWS_FT_FI1 84) chain C residue 343 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU01182 source Swiss-Prot : SWS_FT_FI1 85) chain C residue 354 type BINDING sequence D description BINDING => ECO:0000255|PROSITE-ProRule:PRU01182 source Swiss-Prot : SWS_FT_FI1 86) chain A residue 286 type SITE sequence E description Indirect zinc-binding => ECO:0000250 source Swiss-Prot : SWS_FT_FI3 87) chain C residue 286 type SITE sequence E description Indirect zinc-binding => ECO:0000250 source Swiss-Prot : SWS_FT_FI3 88) chain A residue 356 type BINDING sequence H description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI2 89) chain A residue 397 type BINDING sequence C description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI2 90) chain A residue 404 type BINDING sequence H description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI2 91) chain A residue 406 type BINDING sequence H description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI2 92) chain C residue 356 type BINDING sequence H description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI2 93) chain C residue 397 type BINDING sequence C description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI2 94) chain C residue 404 type BINDING sequence H description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI2 95) chain C residue 406 type BINDING sequence H description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI2

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