eF-site ID 4mq9-C
PDB Code 4mq9
Chain C

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Title Crystal structure of Thermus thermophilus RNA polymerase holoenzyme in complex with GE23077
Classification TRANSCRIPTION, TRANSFERASE/ANTIBIOTIC
Compound DNA-directed RNA polymerase subunit alpha
Source ORGANISM_SCIENTIFIC: Thermus thermophilus;
Sequence C:  MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRE
NVGIQAAFRETFPILDFLEYRLGEPPFPQDECREKDLTYQ
APLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFIING
ADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPW
IDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQETLAREL
GAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRD
KAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLA
DEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGEL
MTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLE
AAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLT
RERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYA
RVDELGFIRTPYRRVVGGVVTDEVVYMTATEEDRYTIAQA
NTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQV
FSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVV
MTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGR
LVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGP
ASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDF
YTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDE
EGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFG
EKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGV
REVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMP
HLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQ
RYISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKR
EVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRT
GEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQ
PLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDD
IEGRNAAYEAIIKGEDVPEPSVPESFRVLVKELQALALDV
QTLDEKDNPVDIFEGLASKR
Description


Functional site

1) chain C
residue 444
type
sequence P
description BINDING SITE FOR CHAIN I OF GE23077
source : AC4

2) chain C
residue 445
type
sequence E
description BINDING SITE FOR CHAIN I OF GE23077
source : AC4

3) chain C
residue 446
type
sequence G
description BINDING SITE FOR CHAIN I OF GE23077
source : AC4

4) chain C
residue 448
type
sequence N
description BINDING SITE FOR CHAIN I OF GE23077
source : AC4

5) chain C
residue 557
type
sequence R
description BINDING SITE FOR CHAIN I OF GE23077
source : AC4

6) chain C
residue 560
type
sequence M
description BINDING SITE FOR CHAIN I OF GE23077
source : AC4

7) chain C
residue 563
type
sequence N
description BINDING SITE FOR CHAIN I OF GE23077
source : AC4

8) chain C
residue 567
type
sequence Q
description BINDING SITE FOR CHAIN I OF GE23077
source : AC4

9) chain C
residue 838
type
sequence K
description BINDING SITE FOR CHAIN I OF GE23077
source : AC4

10) chain C
residue 846
type
sequence K
description BINDING SITE FOR CHAIN I OF GE23077
source : AC4

11) chain C
residue 836-848
type prosite
sequence GDKLANRHGNKGV
description RNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV
source prosite : PS01166


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