eF-site ID 4mm3-B
PDB Code 4mm3
Chain B

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Title Crystal structure of SARS-CoV papain-like protease PLpro in complex with ubiquitin aldehyde
Classification SIGNALING PROTEIN/HYDROLASE
Compound Ubiquitin
Source Homo sapiens (Human) (R1A_CVHSA)
Sequence B:  MEVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGA
DVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESF
LGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLA
LQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTV
GELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTL
TGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQES
SFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAK
ETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIK
Description (1)  Ubiquitin, Papain-like proteinase (E.C.3.4.19.12, 3.4.22.69)


Functional site

1) chain B
residue 190
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 401
source : AC1

2) chain B
residue 193
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 401
source : AC1

3) chain B
residue 225
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 401
source : AC1

4) chain B
residue 227
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 401
source : AC1

5) chain B
residue 193
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00444
source Swiss-Prot : SWS_FT_FI3

6) chain B
residue 225
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00444
source Swiss-Prot : SWS_FT_FI3

7) chain B
residue 227
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00444
source Swiss-Prot : SWS_FT_FI3

8) chain B
residue 190
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00444
source Swiss-Prot : SWS_FT_FI3

9) chain B
residue 190-227
type ZN_FING
sequence CKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVC
description C4-type => ECO:0000255|PROSITE-ProRule:PRU00444, ECO:0000269|PubMed:16306590
source Swiss-Prot : SWS_FT_FI1

10) chain B
residue 112
type ACT_SITE
sequence C
description For PL-PRO activity => ECO:0000255|PROSITE-ProRule:PRU00444, ECO:0000269|PubMed:16306590
source Swiss-Prot : SWS_FT_FI2

11) chain B
residue 273
type ACT_SITE
sequence H
description For PL-PRO activity => ECO:0000255|PROSITE-ProRule:PRU00444, ECO:0000269|PubMed:16306590
source Swiss-Prot : SWS_FT_FI2

12) chain B
residue 287
type ACT_SITE
sequence D
description For PL-PRO activity => ECO:0000255|PROSITE-ProRule:PRU00444, ECO:0000269|PubMed:16306590
source Swiss-Prot : SWS_FT_FI2


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