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eF-site ID
|
4lk1-L |
PDB Code
|
4lk1 |
Chain
|
L |
|
click to enlarge
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Title
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Crystal Structure Analysis of the E.coli holoenzyme |
Classification
|
TRANSFERASE |
Compound
|
DNA-directed RNA polymerase subunit alpha |
Source
|
Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1) (RPOD_ECOLI) |
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Sequence
|
L: |
SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQ
MINDMGIQVMNTADEDAAEAAAQVLSSVESTTDPVRMYMR
EMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITY
LLEQYDRVEAEEARLSDLITGFVDDPELAREKFAELRAQY
VVTRDTIKATAQEEILKLSEVFKQFRLVPKQFDYLVNSMR
VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDT
WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLT
IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY
TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW
IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM
GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD
EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR
EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSEVLRSFLDD
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Description
|
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Functional site
|
|
1)
|
chain |
L |
residue |
573-592 |
type |
DNA_BIND |
sequence |
LEEVGKQFDVTRERIRQIEA
|
description |
H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
2)
|
chain |
L |
residue |
562 |
type |
SITE |
sequence |
R
|
description |
Interaction with anti-sigma factors
|
source |
Swiss-Prot : SWS_FT_FI2
|
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