|
eF-site ID
|
4kud-ABCDEFGH |
PDB Code
|
4kud |
Chain
|
A, B, C, D, E, F, G, H |
|
click to enlarge
|
|
Title
|
Crystal structure of N-terminal acetylated Sir3 BAH domain D205N mutant in complex with yeast nucleosome core particle |
Classification
|
STRUCTURAL PROTEIN/TRANSCRIPTION/DNA |
Compound
|
Histone H3 |
Source
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (SIR3_YEAST) |
|
Sequence
|
A: |
PHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQD
FKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRV
TIQKKDIKLARRLRGE
|
B: |
AKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEV
RAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG
RTLYGFGG
|
C: |
QSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAV
LEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELN
KLLGNVTIAQGGVLPNIHQNLLP
|
D: |
KETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERI
ATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSE
GTRAVTKYSSSTQ
|
E: |
KKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIA
QDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAK
RVTIQKKDIKLARRLRGE
|
F: |
GGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYE
EVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR
QGRTLYGFGG
|
G: |
SQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTA
VLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDEL
NKLLGNVTIAQGGVLPNIHQNLLPK
|
H: |
RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFER
IATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS
EGTRAVTKYSSSTQ
|
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Description
|
|
Functional site
|
|
1)
|
chain |
G |
residue |
21 |
type |
MOD_RES |
sequence |
K
|
description |
N6-acetyllysine; alternate => ECO:0000269|PubMed:19113941
|
source |
Swiss-Prot : SWS_FT_FI5
|
|
2)
|
chain |
F |
residue |
31 |
type |
MOD_RES |
sequence |
K
|
description |
N6-butyryllysine; alternate => ECO:0000269|PubMed:19113941
|
source |
Swiss-Prot : SWS_FT_FI6
|
|
3)
|
chain |
F |
residue |
77 |
type |
MOD_RES |
sequence |
K
|
description |
N6-butyryllysine; alternate => ECO:0000269|PubMed:19113941
|
source |
Swiss-Prot : SWS_FT_FI6
|
|
4)
|
chain |
C |
residue |
22-28 |
type |
prosite |
sequence |
AGLTFPV
|
description |
HISTONE_H2A Histone H2A signature. AGLtFPV
|
source |
prosite : PS00046
|
|
5)
|
chain |
D |
residue |
95-117 |
type |
prosite |
sequence |
REIQTAVRLILPGELAKHAVSEG
|
description |
HISTONE_H2B Histone H2B signature. REIQTavRlILpGELaKHAVSEG
|
source |
prosite : PS00357
|
|
6)
|
chain |
A |
residue |
66-74 |
type |
prosite |
sequence |
PFQRLVREI
|
description |
HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
|
source |
prosite : PS00959
|
|
7)
|
chain |
B |
residue |
91 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:10642555, ECO:0000269|PubMed:12535538, ECO:0000269|PubMed:12535539, ECO:0000269|PubMed:14660635, ECO:0000269|PubMed:15280549, ECO:0000269|PubMed:16432255
|
source |
Swiss-Prot : SWS_FT_FI11
|
|
8)
|
chain |
D |
residue |
123 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:10642555, ECO:0000269|PubMed:12535538, ECO:0000269|PubMed:12535539, ECO:0000269|PubMed:14660635, ECO:0000269|PubMed:15280549, ECO:0000269|PubMed:16432255
|
source |
Swiss-Prot : SWS_FT_FI11
|
|
9)
|
chain |
H |
residue |
123 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:10642555, ECO:0000269|PubMed:12535538, ECO:0000269|PubMed:12535539, ECO:0000269|PubMed:14660635, ECO:0000269|PubMed:15280549, ECO:0000269|PubMed:16432255
|
source |
Swiss-Prot : SWS_FT_FI11
|
|
10)
|
chain |
D |
residue |
46 |
type |
MOD_RES |
sequence |
K
|
description |
N6-succinyllysine => ECO:0000269|PubMed:22389435
|
source |
Swiss-Prot : SWS_FT_FI8
|
|
11)
|
chain |
H |
residue |
46 |
type |
MOD_RES |
sequence |
K
|
description |
N6-succinyllysine => ECO:0000269|PubMed:22389435
|
source |
Swiss-Prot : SWS_FT_FI8
|
|
12)
|
chain |
D |
residue |
37 |
type |
MOD_RES |
sequence |
K
|
description |
N6,N6-dimethyllysine => ECO:0000269|PubMed:19113941
|
source |
Swiss-Prot : SWS_FT_FI9
|
|
13)
|
chain |
H |
residue |
37 |
type |
MOD_RES |
sequence |
K
|
description |
N6,N6-dimethyllysine => ECO:0000269|PubMed:19113941
|
source |
Swiss-Prot : SWS_FT_FI9
|
|
|
|