eF-site ID 4k0k-ABCDEFGHIJKLMNOPQRSTUXY PDB Code 4k0k Chain A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, X, Y click to enlarge Title Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon Classification RIBOSOME Compound 16S ribosomal RNA Source ORGANISM_SCIENTIFIC: Thermus thermophilus; Sequence A:  UGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCG UGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGAUUUUAC UCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGA CCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCU AAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAG GGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCU AGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAG CCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACA CGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUC CGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAG GAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACG AAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGC GCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGG GCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUG UAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCA ACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGG GAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGC AGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUG GUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAA ACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUG CGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACG CGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGA AACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAG CAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAG GCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUG CCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGU CGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAA CGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCG GGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGA GGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGC GACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACC CGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUC GGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCG CUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUC CCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGG GCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCG AGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUA GCUGUACCGGAAGGUGCGGCUGGAUCUUUCU B:  VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQK TMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAE RAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPE IEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVD PTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDD AIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQE C:  GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRG LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGG ERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVA EQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAE QARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAY IFLGEVI D:  GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPG QHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEE ASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLV RHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQN LEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQ LVIEFYSR E:  DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLG FGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEF GASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELG SRNPINIAYATMEALRQLRTKADVERLRKGE F:  MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKV EELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR IRDNVRRVMVVKSQEPFLANA G:  ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAAR IFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVG GANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIA HELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW H:  MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILA REGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVI HHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLT DREARKLGVGGELICEVW I:  EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLV RAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGI ARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARR APQYSKR J:  KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPT RVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTI EQLMTLDLPTGVEIEIKTV K:  KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGY KGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAG REQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS L:  PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVT PKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKK PKEAAK M:  ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINP ATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRL MDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKK K N:  ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCR ICLRELAHKGQLPGVRKASW O:  PITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSE HLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRAL IEKLGIRG P:  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYD PRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVF RQEA Q:  PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKK YLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGR MDLVEKYLIRRQNYESLSKR R:  KAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGL SAKEQRILAKTIKRARILGLLPFTEKLVRK S:  SLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPE MVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRG T:  RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEG KAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK VRQLLEAAGAPLIGGGLSA U:  GKGDRRTRRGKIWRGTYGKYRPRKK X:  UAGUA Y:  AUUXGAAAUC Description (1)  PROTEIN/RNA Complex Functional site 1) chain N residue 24 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1 2) chain N residue 27 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1 3) chain N residue 40 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1 4) chain N residue 43 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1 5) chain K residue 95-117 type prosite sequence IRALQASGLQVKSIVDDTPVPHN description RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaS.GLqVksivDdTPvPHN source prosite : PS00054 6) chain D residue 97-121 type prosite sequence LESRLDNVVYRLGFAVSRRQARQLV description RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV source prosite : PS00632 7) chain B residue 7-18 type prosite sequence VKELLEAGVHFG description RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkELLEAGVHFG source prosite : PS00962 8) chain R residue 32-55 type prosite sequence RDYRNVEVLKRFLSETGKILPRRR description RIBOSOMAL_S18 Ribosomal protein S18 signature. RDYrn.VevLkrFLSEt.GKIlprRR source prosite : PS00057 9) chain R residue 66-81 type prosite sequence LAKTIKRARILGLLPF description ALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LAKTIKraRIlGLlPF source prosite : PS00063 10) chain E residue 23-55 type prosite sequence GRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAV description RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFgAlvVVGDrq.GrVGlGfgkap.EVpl.AV source prosite : PS00585 11) chain G residue 20-46 type prosite sequence DVLVTAFINKIMRDGKKNLAARIFYDA description RIBOSOMAL_S7 Ribosomal protein S7 signature. DvLvtaFInkimrdGKKnlaarIFydA source prosite : PS00052 12) chain O residue 39-69 type prosite sequence LSEHLKVHKKDHHSHRGLLMMVGQRRRLLRY description RIBOSOMAL_S15 Ribosomal protein S15 signature. LseHLkvhKkDhhShrgLlmMvgqrrrLlrY source prosite : PS00362 13) chain L residue 46-53 type prosite sequence KKPNSALR description RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR source prosite : PS00055 14) chain S residue 53-77 type prosite sequence NGKQHVPVYITENMVGHKLGEFAPT description RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqhvpvyItenmVGhkLGEFapT source prosite : PS00323 15) chain Q residue 54-66 type prosite sequence GDVVEIIESRPIS description RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIiEsRPIS source prosite : PS00056 16) chain M residue 88-101 type prosite sequence RGLRHRRGLPVRGQ description RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ source prosite : PS00646 17) chain J residue 27-42 type prosite sequence ARRSGAQVSGPIPLPT description RIBOSOMAL_S10 Ribosomal protein S10 signature. ArrsGAqvsGPIpLPT source prosite : PS00361 18) chain C residue 163-197 type prosite sequence ARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLG description RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewaaqGrVplHt..LranIDygfalarTtyGvlG source prosite : PS00548 19) chain H residue 108-125 type prosite sequence GIAILSTSKGVLTDREAR description RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaILSTSkGVLtdreAR source prosite : PS00053 20) chain F residue 44-53 type prosite sequence GLRRLAYPIA description RIBOSOMAL_S6 Ribosomal protein S6 signature. GlRRLAYpIA source prosite : PS01048 21) chain I residue 67-85 type prosite sequence GGGKSGQIDAIKLGIARAL description RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGksGQidAiklGiARAL source prosite : PS00360 22) chain N residue 23-45 type prosite sequence RCVRCGRARSVYRFFGLCRICLR description RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvrcgrarsvyrfFGLCRiCLR source prosite : PS00527

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