eF-site ID 4iub-LS
PDB Code 4iub
Chain L, S

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Title Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in its as-isolated form - oxidized state 1
Classification OXIDOREDUCTASE
Compound Uptake hydrogenase large subunit
Source Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha) (MBHS_CUPNH)
Sequence L:  SAYATQGFNLDDRGRRIVVDPVTRIEGHMRCEVNVDANNV
IRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGC
HALASVRAVENALDIRIPKNAHLIREIMAKTLQVHDHAVH
FYHLHALDWVDVMSALKADPKRTSELQQLVSPAHPLSSAG
YFRDIQNRLKRFVESGQLGPFMNGYWGSKAYVLPPEANLM
AVTHYLEALDLQKEWVKIHTIFGGKNPHPNYLVGGVPCAI
NLDGIGAASAPVNMERLSFVKARIDEIIEFNKNVYVPDVL
AIGTLYKQAGWLYGGGLAATNVLDYGEYPNVAYNKSTDQL
PGGAILNGNWDEVFPVDPRDSQQVQEFVSHSWYKYADESV
GLHPWDGVTEPNYVLGANTKGTRTRIEQIDESAKYSWIKS
PRWRGHAMEVGPLSRYILAYAHARSGNKYAERPKEQLEYS
AQMINSAIPKALGLPETQYTLKQLLPSTIGRTLARALESQ
YCGEMMHSDWHDLVANIRAGDTATANVDKWDPATWPLQAK
GVGTVAAPRGALGHWIRIKDGRIENYQCVVPTTWNGSPRD
YKGQIGAFEASLMNTPMVNPEQPVEILRTLHSFDPCLACS
TH
S:  PRTPVLWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDY
DDTLMAAAGHQAEAILEEIMTKYKGNYILAVEGNPPLNQD
GMSCIIGGRPFIEQLKYVAKDAKAIISWGSCASWGCVQAA
KPNPTQATPVHKVITDKPIIKVPGCPPIAEVMTGVITYML
TFDRIPELDRQGRPKMFYSQRIHDKCYRRPHFDAGQFVEE
WDDESARKGFCLYKMGCKGPTTYNACSTTRWNEGTSFPIQ
SGHGCIGCSEDGFWDKGSFYDRLT
Description


Functional site

1) chain L
residue 75
type
sequence C
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

2) chain L
residue 78
type
sequence C
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

3) chain L
residue 81
type
sequence C
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

4) chain L
residue 82
type
sequence H
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

5) chain L
residue 528
type
sequence A
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

6) chain L
residue 529
type
sequence P
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

7) chain L
residue 530
type
sequence R
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

8) chain L
residue 533
type
sequence L
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

9) chain L
residue 551
type
sequence V
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

10) chain L
residue 552
type
sequence P
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

11) chain L
residue 553
type
sequence T
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

12) chain L
residue 597
type
sequence C
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

13) chain L
residue 600
type
sequence C
description BINDING SITE FOR RESIDUE NFV L 701
source : AC1

14) chain L
residue 56
type
sequence E
description BINDING SITE FOR RESIDUE MG L 702
source : AC2

15) chain L
residue 549
type
sequence C
description BINDING SITE FOR RESIDUE MG L 702
source : AC2

16) chain L
residue 603
type
sequence H
description BINDING SITE FOR RESIDUE MG L 702
source : AC2

17) chain L
residue 88
type
sequence R
description BINDING SITE FOR RESIDUE PO4 L 703
source : AC3

18) chain L
residue 98
type
sequence I
description BINDING SITE FOR RESIDUE PO4 L 703
source : AC3

19) chain L
residue 103
type
sequence H
description BINDING SITE FOR RESIDUE PO4 L 703
source : AC3

20) chain L
residue 106
type
sequence R
description BINDING SITE FOR RESIDUE PO4 L 703
source : AC3

21) chain L
residue 521
type
sequence K
description BINDING SITE FOR RESIDUE PO4 L 704
source : AC4

22) chain L
residue 538
type
sequence R
description BINDING SITE FOR RESIDUE PO4 L 704
source : AC4

23) chain S
residue 168
type
sequence R
description BINDING SITE FOR RESIDUE PO4 L 704
source : AC4

24) chain S
residue 169
type
sequence I
description BINDING SITE FOR RESIDUE PO4 L 704
source : AC4

25) chain L
residue 501
type
sequence G
description BINDING SITE FOR RESIDUE PO4 L 705
source : AC5

26) chain L
residue 502
type
sequence D
description BINDING SITE FOR RESIDUE PO4 L 705
source : AC5

27) chain L
residue 503
type
sequence T
description BINDING SITE FOR RESIDUE PO4 L 705
source : AC5

28) chain L
residue 504
type
sequence A
description BINDING SITE FOR RESIDUE PO4 L 705
source : AC5

29) chain S
residue 211
type
sequence R
description BINDING SITE FOR RESIDUE PO4 L 705
source : AC5

30) chain L
residue 247
type
sequence G
description BINDING SITE FOR RESIDUE PO4 L 706
source : AC6

31) chain L
residue 248
type
sequence A
description BINDING SITE FOR RESIDUE PO4 L 706
source : AC6

32) chain L
residue 249
type
sequence A
description BINDING SITE FOR RESIDUE PO4 L 706
source : AC6

33) chain L
residue 383
type
sequence T
description BINDING SITE FOR RESIDUE PO4 L 707
source : AC7

34) chain L
residue 384
type
sequence R
description BINDING SITE FOR RESIDUE PO4 L 707
source : AC7

35) chain S
residue 187
type
sequence H
description BINDING SITE FOR RESIDUE SF4 S 1001
source : AC8

36) chain S
residue 190
type
sequence C
description BINDING SITE FOR RESIDUE SF4 S 1001
source : AC8

37) chain S
residue 193
type
sequence R
description BINDING SITE FOR RESIDUE SF4 S 1001
source : AC8

38) chain S
residue 215
type
sequence C
description BINDING SITE FOR RESIDUE SF4 S 1001
source : AC8

39) chain S
residue 216
type
sequence L
description BINDING SITE FOR RESIDUE SF4 S 1001
source : AC8

40) chain S
residue 221
type
sequence C
description BINDING SITE FOR RESIDUE SF4 S 1001
source : AC8

41) chain L
residue 226
type
sequence K
description BINDING SITE FOR RESIDUE F3S S 1002
source : AC9

42) chain S
residue 226
type
sequence T
description BINDING SITE FOR RESIDUE F3S S 1002
source : AC9

43) chain S
residue 228
type
sequence N
description BINDING SITE FOR RESIDUE F3S S 1002
source : AC9

44) chain S
residue 230
type
sequence C
description BINDING SITE FOR RESIDUE F3S S 1002
source : AC9

45) chain S
residue 235
type
sequence W
description BINDING SITE FOR RESIDUE F3S S 1002
source : AC9

46) chain S
residue 242
type
sequence P
description BINDING SITE FOR RESIDUE F3S S 1002
source : AC9

47) chain S
residue 249
type
sequence C
description BINDING SITE FOR RESIDUE F3S S 1002
source : AC9

48) chain S
residue 250
type
sequence I
description BINDING SITE FOR RESIDUE F3S S 1002
source : AC9

49) chain S
residue 252
type
sequence C
description BINDING SITE FOR RESIDUE F3S S 1002
source : AC9

50) chain L
residue 73
type
sequence R
description BINDING SITE FOR RESIDUE S3F S 1003
source : BC1

51) chain L
residue 229
type
sequence H
description BINDING SITE FOR RESIDUE S3F S 1003
source : BC1

52) chain S
residue 17
type
sequence C
description BINDING SITE FOR RESIDUE S3F S 1003
source : BC1

53) chain S
residue 18
type
sequence T
description BINDING SITE FOR RESIDUE S3F S 1003
source : BC1

54) chain S
residue 19
type
sequence C
description BINDING SITE FOR RESIDUE S3F S 1003
source : BC1

55) chain S
residue 20
type
sequence C
description BINDING SITE FOR RESIDUE S3F S 1003
source : BC1

56) chain S
residue 76
type
sequence E
description BINDING SITE FOR RESIDUE S3F S 1003
source : BC1

57) chain S
residue 114
type
sequence S
description BINDING SITE FOR RESIDUE S3F S 1003
source : BC1

58) chain S
residue 115
type
sequence C
description BINDING SITE FOR RESIDUE S3F S 1003
source : BC1

59) chain S
residue 120
type
sequence C
description BINDING SITE FOR RESIDUE S3F S 1003
source : BC1

60) chain S
residue 149
type
sequence C
description BINDING SITE FOR RESIDUE S3F S 1003
source : BC1

61) chain L
residue 342
type
sequence S
description BINDING SITE FOR RESIDUE PO4 S 1004
source : BC2

62) chain S
residue 171
type
sequence E
description BINDING SITE FOR RESIDUE PO4 S 1004
source : BC2

63) chain S
residue 172
type
sequence L
description BINDING SITE FOR RESIDUE PO4 S 1004
source : BC2

64) chain S
residue 118
type
sequence W
description BINDING SITE FOR RESIDUE CL S 1005
source : BC3

65) chain S
residue 120
type
sequence C
description BINDING SITE FOR RESIDUE CL S 1005
source : BC3

66) chain S
residue 256
type
sequence G
description BINDING SITE FOR RESIDUE CL S 1005
source : BC3

67) chain L
residue 53-78
type prosite
sequence RGLEVILKGRDPRDAWAFVERICGVC
description NI_HGENASE_L_1 Nickel-dependent hydrogenases large subunit signature 1. RGLEvilkgrdprdawafvERiCGVC
source prosite : PS00507

68) chain L
residue 594-603
type prosite
sequence FDPCLACSTH
description NI_HGENASE_L_2 Nickel-dependent hydrogenases large subunit signature 2. FDPCLACst.H
source prosite : PS00508

69) chain S
residue 17
type BINDING
sequence C
description BINDING => ECO:0000250|UniProtKB:P21853
source Swiss-Prot : SWS_FT_FI1

70) chain S
residue 249
type BINDING
sequence C
description BINDING => ECO:0000250|UniProtKB:P21853
source Swiss-Prot : SWS_FT_FI1

71) chain S
residue 252
type BINDING
sequence C
description BINDING => ECO:0000250|UniProtKB:P21853
source Swiss-Prot : SWS_FT_FI1

72) chain S
residue 20
type BINDING
sequence C
description BINDING => ECO:0000250|UniProtKB:P21853
source Swiss-Prot : SWS_FT_FI1

73) chain S
residue 115
type BINDING
sequence C
description BINDING => ECO:0000250|UniProtKB:P21853
source Swiss-Prot : SWS_FT_FI1

74) chain S
residue 149
type BINDING
sequence C
description BINDING => ECO:0000250|UniProtKB:P21853
source Swiss-Prot : SWS_FT_FI1

75) chain S
residue 187
type BINDING
sequence H
description BINDING => ECO:0000250|UniProtKB:P21853
source Swiss-Prot : SWS_FT_FI1

76) chain S
residue 190
type BINDING
sequence C
description BINDING => ECO:0000250|UniProtKB:P21853
source Swiss-Prot : SWS_FT_FI1

77) chain S
residue 215
type BINDING
sequence C
description BINDING => ECO:0000250|UniProtKB:P21853
source Swiss-Prot : SWS_FT_FI1

78) chain S
residue 221
type BINDING
sequence C
description BINDING => ECO:0000250|UniProtKB:P21853
source Swiss-Prot : SWS_FT_FI1

79) chain S
residue 230
type BINDING
sequence C
description BINDING => ECO:0000250|UniProtKB:P21853
source Swiss-Prot : SWS_FT_FI1


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