eF-site ID 4hjx-AB
PDB Code 4hjx
Chain A, B

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Title Crystal structure of F2YRS complexed with F2Y
Classification LIGASE
Compound Tyrosine-tRNA ligase
Source Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (SYY_METJA)
Sequence A:  MDEFEMIKRNTSEIISEEELREVLKKDEKSARIGFEPSGK
IHLGHYLQIKKMIDLQNAGFDIIIYLADLGAYLNQKGELD
EIRKIGDYNKKVFEAMGLKAKYVYGSENCLDKDYTLNVYR
LALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNNIH
YSGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLD
GEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNP
IMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNK
ELHPMDLKNAVAEELIKILEPIRKRL
B:  MDEFEMIKRNTSEIISEEELREVLKKDEKSARIGFEPSGK
IHLGHYLQIKKMIDLQNAGFDIIIYLADLGAYLNQKGELD
EIRKIGDYNKKVFEAMGLKAKYVYGSENCLDKDYTLNVYR
LALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNNIH
YSGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLD
GEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNP
IMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNK
ELHPMDLKNAVAEELIKILEPIRKRL
Description


Functional site

1) chain A
residue 32
type
sequence R
description BINDING SITE FOR RESIDUE F2Y A 401
source : AC1

2) chain A
residue 34
type
sequence G
description BINDING SITE FOR RESIDUE F2Y A 401
source : AC1

3) chain A
residue 36
type
sequence E
description BINDING SITE FOR RESIDUE F2Y A 401
source : AC1

4) chain A
residue 67
type
sequence A
description BINDING SITE FOR RESIDUE F2Y A 401
source : AC1

5) chain A
residue 137
type
sequence I
description BINDING SITE FOR RESIDUE F2Y A 401
source : AC1

6) chain A
residue 151
type
sequence Y
description BINDING SITE FOR RESIDUE F2Y A 401
source : AC1

7) chain A
residue 155
type
sequence Q
description BINDING SITE FOR RESIDUE F2Y A 401
source : AC1

8) chain A
residue 158
type
sequence N
description BINDING SITE FOR RESIDUE F2Y A 401
source : AC1

9) chain A
residue 173
type
sequence Q
description BINDING SITE FOR RESIDUE F2Y A 401
source : AC1

10) chain B
residue 32
type
sequence R
description BINDING SITE FOR RESIDUE F2Y B 401
source : AC2

11) chain B
residue 34
type
sequence G
description BINDING SITE FOR RESIDUE F2Y B 401
source : AC2

12) chain B
residue 36
type
sequence E
description BINDING SITE FOR RESIDUE F2Y B 401
source : AC2

13) chain B
residue 67
type
sequence A
description BINDING SITE FOR RESIDUE F2Y B 401
source : AC2

14) chain B
residue 137
type
sequence I
description BINDING SITE FOR RESIDUE F2Y B 401
source : AC2

15) chain B
residue 151
type
sequence Y
description BINDING SITE FOR RESIDUE F2Y B 401
source : AC2

16) chain B
residue 155
type
sequence Q
description BINDING SITE FOR RESIDUE F2Y B 401
source : AC2

17) chain B
residue 158
type
sequence N
description BINDING SITE FOR RESIDUE F2Y B 401
source : AC2

18) chain B
residue 173
type
sequence Q
description BINDING SITE FOR RESIDUE F2Y B 401
source : AC2

19) chain A
residue 207
type BINDING
sequence S
description BINDING => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

20) chain B
residue 207
type BINDING
sequence S
description BINDING => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

21) chain A
residue 32
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:12754495
source Swiss-Prot : SWS_FT_FI1

22) chain A
residue 36
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:12754495
source Swiss-Prot : SWS_FT_FI1

23) chain A
residue 173
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:12754495
source Swiss-Prot : SWS_FT_FI1

24) chain B
residue 32
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:12754495
source Swiss-Prot : SWS_FT_FI1

25) chain B
residue 36
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:12754495
source Swiss-Prot : SWS_FT_FI1

26) chain B
residue 173
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:12754495
source Swiss-Prot : SWS_FT_FI1

27) chain A
residue 143
type SITE
sequence N
description Interaction with t-RNA
source Swiss-Prot : SWS_FT_FI3

28) chain B
residue 143
type SITE
sequence N
description Interaction with t-RNA
source Swiss-Prot : SWS_FT_FI3

29) chain A
residue 37-46
type prosite
sequence PSGKIHLGHY
description AA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. P..SGkIHLGHY
source prosite : PS00178


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