|
|
eF-site ID
|
4hau-A |
|
PDB Code
|
4hau |
|
Chain
|
A |
|
click to enlarge
|
|
|
Title
|
Crystal structure of CRM1 inhibitor Ratjadone A in complex with CRM1-Ran-RanBP1 |
|
Classification
|
PROTEIN TRANSPORT/ANTIBIOTIC |
|
Compound
|
GTP-binding nuclear protein Ran |
|
Source
|
Homo sapiens (Human) (XPO1_YEAST) |
|
|
Sequence
|
A: |
VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH
PLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII
MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD
RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL
IGDPNLEFVAMPALAPPEQYEHDLEVAQTTALPDEDDDL
|
|
|
Description
|
(1) |
GTP-binding nuclear protein Ran, Ran-specific GTPase-activating protein 1, Exportin-1
|
|
Functional site
|
|
|
1)
|
chain |
A |
| residue |
18 |
| type |
|
| sequence |
D
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
2)
|
chain |
A |
| residue |
19 |
| type |
|
| sequence |
G
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
3)
|
chain |
A |
| residue |
20 |
| type |
|
| sequence |
G
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
4)
|
chain |
A |
| residue |
21 |
| type |
|
| sequence |
T
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
5)
|
chain |
A |
| residue |
22 |
| type |
|
| sequence |
G
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
6)
|
chain |
A |
| residue |
23 |
| type |
|
| sequence |
K
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
7)
|
chain |
A |
| residue |
24 |
| type |
|
| sequence |
T
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
8)
|
chain |
A |
| residue |
25 |
| type |
|
| sequence |
T
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
9)
|
chain |
A |
| residue |
35 |
| type |
|
| sequence |
F
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
10)
|
chain |
A |
| residue |
36 |
| type |
|
| sequence |
E
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
11)
|
chain |
A |
| residue |
37 |
| type |
|
| sequence |
K
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
12)
|
chain |
A |
| residue |
38 |
| type |
|
| sequence |
K
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
13)
|
chain |
A |
| residue |
39 |
| type |
|
| sequence |
Y
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
14)
|
chain |
A |
| residue |
42 |
| type |
|
| sequence |
T
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
15)
|
chain |
A |
| residue |
68 |
| type |
|
| sequence |
G
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
16)
|
chain |
A |
| residue |
69 |
| type |
|
| sequence |
Q
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
17)
|
chain |
A |
| residue |
122 |
| type |
|
| sequence |
N
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
18)
|
chain |
A |
| residue |
123 |
| type |
|
| sequence |
K
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
19)
|
chain |
A |
| residue |
125 |
| type |
|
| sequence |
D
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
20)
|
chain |
A |
| residue |
126 |
| type |
|
| sequence |
I
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
21)
|
chain |
A |
| residue |
150 |
| type |
|
| sequence |
S
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
22)
|
chain |
A |
| residue |
151 |
| type |
|
| sequence |
A
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
23)
|
chain |
A |
| residue |
152 |
| type |
|
| sequence |
K
|
| description |
BINDING SITE FOR RESIDUE GNP A 301
|
| source |
: AC1
|
|
|
24)
|
chain |
A |
| residue |
24 |
| type |
|
| sequence |
T
|
| description |
BINDING SITE FOR RESIDUE MG A 302
|
| source |
: AC2
|
|
|
25)
|
chain |
A |
| residue |
42 |
| type |
|
| sequence |
T
|
| description |
BINDING SITE FOR RESIDUE MG A 302
|
| source |
: AC2
|
|
|
26)
|
chain |
A |
| residue |
196 |
| type |
|
| sequence |
Q
|
| description |
BINDING SITE FOR RESIDUE EDO A 303
|
| source |
: AC3
|
|
|
27)
|
chain |
A |
| residue |
197 |
| type |
|
| sequence |
Y
|
| description |
BINDING SITE FOR RESIDUE EDO A 303
|
| source |
: AC3
|
|
|
28)
|
chain |
A |
| residue |
103 |
| type |
|
| sequence |
N
|
| description |
BINDING SITE FOR RESIDUE EDO A 304
|
| source |
: AC4
|
|
|
29)
|
chain |
A |
| residue |
107 |
| type |
|
| sequence |
D
|
| description |
BINDING SITE FOR RESIDUE EDO A 304
|
| source |
: AC4
|
|
|
30)
|
chain |
A |
| residue |
105 |
| type |
|
| sequence |
H
|
| description |
BINDING SITE FOR RESIDUE GOL C 1103
|
| source |
: AC7
|
|
|
31)
|
chain |
A |
| residue |
109 |
| type |
|
| sequence |
V
|
| description |
BINDING SITE FOR RESIDUE GOL C 1103
|
| source |
: AC7
|
|
|
32)
|
chain |
A |
| residue |
110 |
| type |
|
| sequence |
R
|
| description |
BINDING SITE FOR RESIDUE GOL C 1103
|
| source |
: AC7
|
|
|
33)
|
chain |
A |
| residue |
142 |
| type |
|
| sequence |
K
|
| description |
BINDING SITE FOR RESIDUE GOL C 1103
|
| source |
: AC7
|
|
|
34)
|
chain |
A |
| residue |
18 |
| type |
BINDING |
| sequence |
D
|
| description |
BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:18611384, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:19505478, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1IBR, ECO:0007744|PDB:1K5G, ECO:0007744|PDB:1RRP, ECO:0007744|PDB:3CH5, ECO:0007744|PDB:3GJ0, ECO:0007744|PDB:3GJ3, ECO:0007744|PDB:3GJ4, ECO:0007744|PDB:3GJ5, ECO:0007744|PDB:3GJ6, ECO:0007744|PDB:3GJ7, ECO:0007744|PDB:3GJ8, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5CIQ, ECO:0007744|PDB:5CIT, ECO:0007744|PDB:5CIW, ECO:0007744|PDB:5CLQ, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
35)
|
chain |
A |
| residue |
36 |
| type |
BINDING |
| sequence |
E
|
| description |
BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1IBR, ECO:0007744|PDB:1K5D, ECO:0007744|PDB:1QBK, ECO:0007744|PDB:1RRP, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5CLL, ECO:0007744|PDB:5CLQ, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
|
36)
|
chain |
A |
| residue |
68 |
| type |
BINDING |
| sequence |
G
|
| description |
BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:18611384, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:19505478, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1IBR, ECO:0007744|PDB:1K5D, ECO:0007744|PDB:1QBK, ECO:0007744|PDB:1RRP, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
37)
|
chain |
A |
| residue |
122 |
| type |
BINDING |
| sequence |
N
|
| description |
BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:18611384, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:19505478, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1IBR, ECO:0007744|PDB:1K5D, ECO:0007744|PDB:1QBK, ECO:0007744|PDB:1RRP, ECO:0007744|PDB:3CH5, ECO:0007744|PDB:3GJ0, ECO:0007744|PDB:3GJ3, ECO:0007744|PDB:3GJ4, ECO:0007744|PDB:3GJ5, ECO:0007744|PDB:3GJ6, ECO:0007744|PDB:3GJ7, ECO:0007744|PDB:3GJ8, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5CIQ, ECO:0007744|PDB:5CIT, ECO:0007744|PDB:5CIW, ECO:0007744|PDB:5CJ2, ECO:0007744|PDB:5CLL, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
|
38)
|
chain |
A |
| residue |
150 |
| type |
BINDING |
| sequence |
S
|
| description |
BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:18611384, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:19505478, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1K5G, ECO:0007744|PDB:3CH5, ECO:0007744|PDB:3GJ0, ECO:0007744|PDB:3GJ3, ECO:0007744|PDB:3GJ4, ECO:0007744|PDB:3GJ5, ECO:0007744|PDB:3GJ6, ECO:0007744|PDB:3GJ7, ECO:0007744|PDB:3GJ8, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5CIQ, ECO:0007744|PDB:5CIT, ECO:0007744|PDB:5CIW, ECO:0007744|PDB:5CJ2, ECO:0007744|PDB:5CLL, ECO:0007744|PDB:5CLQ, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
|
| source |
Swiss-Prot : SWS_FT_FI5
|
|
|
39)
|
chain |
A |
| residue |
69 |
| type |
SITE |
| sequence |
Q
|
| description |
Essential for GTP hydrolysis => ECO:0000269|PubMed:18591255, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:8636225
|
| source |
Swiss-Prot : SWS_FT_FI6
|
|
|
40)
|
chain |
A |
| residue |
24 |
| type |
MOD_RES |
| sequence |
T
|
| description |
Phosphothreonine => ECO:0007744|PubMed:23186163
|
| source |
Swiss-Prot : SWS_FT_FI8
|
|
|
41)
|
chain |
A |
| residue |
37 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-acetyllysine => ECO:0000269|PubMed:31075303
|
| source |
Swiss-Prot : SWS_FT_FI9
|
|
|
42)
|
chain |
A |
| residue |
60 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-acetyllysine => ECO:0007744|PubMed:19608861
|
| source |
Swiss-Prot : SWS_FT_FI10
|
|
|
43)
|
chain |
A |
| residue |
99 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-acetyllysine => ECO:0007744|PubMed:19608861
|
| source |
Swiss-Prot : SWS_FT_FI10
|
|
|
44)
|
chain |
A |
| residue |
71 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861
|
| source |
Swiss-Prot : SWS_FT_FI11
|
|
|
45)
|
chain |
A |
| residue |
134 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-acetyllysine => ECO:0000269|PubMed:29040603
|
| source |
Swiss-Prot : SWS_FT_FI12
|
|
|
46)
|
chain |
A |
| residue |
159 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62827
|
| source |
Swiss-Prot : SWS_FT_FI13
|
|
|
47)
|
chain |
A |
| residue |
71 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate
|
| source |
Swiss-Prot : SWS_FT_FI14
|
|
|
48)
|
chain |
A |
| residue |
152 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
|
| source |
Swiss-Prot : SWS_FT_FI15
|
|
|
|