eF-site ID 4h2v-ABCD
PDB Code 4h2v
Chain A, B, C, D

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Title Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with glycylated carrier protein
Classification LIGASE
Compound Amino acid--[acyl-carrier-protein] ligase 1
Source Bradyrhizobium japonicum (strain USDA 110) (AACP1_BRAJA)
Sequence A:  DPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITSH
REAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHG
TEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPVYPI
AASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREY
VCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDPF
FGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYH
REHFGTTWGIQDANGEPAHTGCVAFGMDRLAVAMFHTHGT
DLSAWPAKVRDILGL
B:  ADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITS
HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLH
GTEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPVYP
IAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMRE
YVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDP
FFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNY
HREHFGTTWGIQDANGEPAHTGCVAFGMDRLAVAMFHTHG
TDLSAWPAKVRDILGLQ
C:  KLVDVGLTSMDMVNLMLGVEITPENF
D:  DVRNRIIKLVKGILEQNALAADVTPQAKLVDVGLTSMDMV
NLMLGVEAEFDFTIPQSEITPENFQSVETLERMV
Description (1)  Amino acid--[acyl-carrier-protein] ligase 1 (E.C.6.2.1.-), Aminoacyl carrier protein 1


Functional site

1) chain A
residue 131
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 401
source : AC1

2) chain A
residue 176
type
sequence E
description BINDING SITE FOR RESIDUE ZN A 401
source : AC1

3) chain A
residue 279
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 401
source : AC1

4) chain A
residue 159
type
sequence R
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

5) chain A
residue 161
type
sequence E
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

6) chain A
residue 169
type
sequence L
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

7) chain A
residue 172
type
sequence F
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

8) chain A
residue 235
type
sequence K
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

9) chain A
residue 250
type
sequence A
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

10) chain A
residue 251
type
sequence C
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

11) chain A
residue 252
type
sequence M
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

12) chain A
residue 253
type
sequence S
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

13) chain A
residue 281
type
sequence A
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

14) chain A
residue 283
type
sequence G
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

15) chain A
residue 286
type
sequence R
description BINDING SITE FOR RESIDUE AMP A 402
source : AC2

16) chain A
residue 58
type
sequence R
description BINDING SITE FOR RESIDUE ACT A 403
source : AC3

17) chain A
residue 56
type
sequence S
description BINDING SITE FOR RESIDUE ACT A 404
source : AC4

18) chain A
residue 57
type
sequence H
description BINDING SITE FOR RESIDUE ACT A 404
source : AC4

19) chain A
residue 58
type
sequence R
description BINDING SITE FOR RESIDUE ACT A 404
source : AC4

20) chain B
residue 184
type
sequence D
description BINDING SITE FOR RESIDUE ACT A 404
source : AC4

21) chain B
residue 185
type
sequence D
description BINDING SITE FOR RESIDUE ACT A 404
source : AC4

22) chain A
residue 29
type
sequence H
description BINDING SITE FOR RESIDUE ACT A 405
source : AC5

23) chain A
residue 30
type
sequence S
description BINDING SITE FOR RESIDUE ACT A 405
source : AC5

24) chain B
residue 131
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 401
source : AC6

25) chain B
residue 176
type
sequence E
description BINDING SITE FOR RESIDUE ZN B 401
source : AC6

26) chain B
residue 279
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 401
source : AC6

27) chain B
residue 159
type
sequence R
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

28) chain B
residue 161
type
sequence E
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

29) chain B
residue 169
type
sequence L
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

30) chain B
residue 172
type
sequence F
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

31) chain B
residue 174
type
sequence M
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

32) chain B
residue 235
type
sequence K
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

33) chain B
residue 250
type
sequence A
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

34) chain B
residue 251
type
sequence C
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

35) chain B
residue 252
type
sequence M
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

36) chain B
residue 253
type
sequence S
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

37) chain B
residue 283
type
sequence G
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

38) chain B
residue 286
type
sequence R
description BINDING SITE FOR RESIDUE AMP B 402
source : AC7

39) chain B
residue 118
type
sequence S
description BINDING SITE FOR RESIDUE SO4 B 403
source : AC8

40) chain B
residue 163
type
sequence S
description BINDING SITE FOR RESIDUE SO4 B 404
source : AC9

41) chain B
residue 165
type
sequence H
description BINDING SITE FOR RESIDUE SO4 B 404
source : AC9

42) chain B
residue 168
type
sequence R
description BINDING SITE FOR RESIDUE SO4 B 404
source : AC9

43) chain B
residue 168
type
sequence R
description BINDING SITE FOR RESIDUE PO4 B 405
source : BC1

44) chain B
residue 286
type
sequence R
description BINDING SITE FOR RESIDUE PO4 B 405
source : BC1

45) chain B
residue 29
type
sequence H
description BINDING SITE FOR RESIDUE GOL B 406
source : BC2

46) chain B
residue 30
type
sequence S
description BINDING SITE FOR RESIDUE GOL B 406
source : BC2

47) chain A
residue 129
type
sequence A
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

48) chain A
residue 131
type
sequence C
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

49) chain A
residue 132
type
sequence Y
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

50) chain A
residue 176
type
sequence E
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

51) chain A
residue 217
type
sequence F
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

52) chain A
residue 225
type
sequence K
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

53) chain A
residue 229
type
sequence Q
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

54) chain A
residue 255
type
sequence N
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

55) chain A
residue 257
type
sequence H
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

56) chain A
residue 279
type
sequence C
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

57) chain C
residue 41
type
sequence T
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

58) chain C
residue 42
type
sequence S
description BINDING SITE FOR RESIDUE H2V C 101
source : BC3

59) chain B
residue 132
type
sequence Y
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC4

60) chain B
residue 215
type
sequence D
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC4

61) chain B
residue 229
type
sequence Q
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC4

62) chain B
residue 232
type
sequence Q
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC4

63) chain B
residue 255
type
sequence N
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC4

64) chain B
residue 257
type
sequence H
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC4

65) chain D
residue 41
type
sequence T
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC4

66) chain D
residue 42
type
sequence S
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC4

67) chain C
residue 42
type MOD_RES
sequence S
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

68) chain B
residue 131
type MOD_RES
sequence C
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

69) chain B
residue 159
type MOD_RES
sequence R
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

70) chain B
residue 161
type MOD_RES
sequence E
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

71) chain B
residue 168
type MOD_RES
sequence R
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

72) chain B
residue 176
type MOD_RES
sequence E
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

73) chain B
residue 235
type MOD_RES
sequence K
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

74) chain B
residue 250
type MOD_RES
sequence A
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

75) chain B
residue 279
type MOD_RES
sequence C
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

76) chain B
residue 286
type MOD_RES
sequence R
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

77) chain D
residue 42
type MOD_RES
sequence S
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

78) chain A
residue 161
type MOD_RES
sequence E
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

79) chain A
residue 168
type MOD_RES
sequence R
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

80) chain A
residue 176
type MOD_RES
sequence E
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

81) chain A
residue 235
type MOD_RES
sequence K
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

82) chain A
residue 250
type MOD_RES
sequence A
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

83) chain A
residue 279
type MOD_RES
sequence C
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

84) chain A
residue 286
type MOD_RES
sequence R
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1


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