eF-site ID 4h2u-ABCD
PDB Code 4h2u
Chain A, B, C, D

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Title Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and ATP
Classification LIGASE
Compound Amino acid--[acyl-carrier-protein] ligase 1
Source Bradyrhizobium japonicum (strain USDA 110) (AACP1_BRAJA)
Sequence A:  DPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITSH
REAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHG
TEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPVYPI
AASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREY
VCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDPF
FGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYH
REHFGTTWGIQDANGEPAHTGCVAFGMDRLAVAMFHTHGT
DLSAWPAKVRDILGL
B:  ADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITS
HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLH
GTEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPVYP
IAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMRE
YVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDP
FFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNY
HREHFGTTWGIQDANGEPAHTGCVAFGMDRLAVAMFHTHG
TDLSAWPAKVRDILGLQ
C:  TPQAKLVDVGLTSMDMVNLMLGVEAEFDFTIEITPENF
D:  TDVRNRIIKLVKGILEQNALAADVTPQAKLVDVGLTSMDM
VNLMLGVEAEFDFTIPQSEITPENFQSVETLERMVMTQ
Description (1)  Amino acid--[acyl-carrier-protein] ligase 1 (E.C.6.2.1.-), Aminoacyl carrier protein 1


Functional site

1) chain A
residue 131
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 401
source : AC1

2) chain A
residue 176
type
sequence E
description BINDING SITE FOR RESIDUE ZN A 401
source : AC1

3) chain A
residue 279
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 401
source : AC1

4) chain A
residue 159
type
sequence R
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

5) chain A
residue 161
type
sequence E
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

6) chain A
residue 168
type
sequence R
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

7) chain A
residue 169
type
sequence L
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

8) chain A
residue 172
type
sequence F
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

9) chain A
residue 174
type
sequence M
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

10) chain A
residue 215
type
sequence D
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

11) chain A
residue 235
type
sequence K
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

12) chain A
residue 237
type
sequence E
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

13) chain A
residue 250
type
sequence A
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

14) chain A
residue 251
type
sequence C
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

15) chain A
residue 252
type
sequence M
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

16) chain A
residue 253
type
sequence S
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

17) chain A
residue 281
type
sequence A
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

18) chain A
residue 283
type
sequence G
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

19) chain A
residue 286
type
sequence R
description BINDING SITE FOR RESIDUE ATP A 402
source : AC2

20) chain A
residue 159
type
sequence R
description BINDING SITE FOR RESIDUE MG A 403
source : AC3

21) chain A
residue 161
type
sequence E
description BINDING SITE FOR RESIDUE MG A 403
source : AC3

22) chain A
residue 168
type
sequence R
description BINDING SITE FOR RESIDUE MG A 403
source : AC3

23) chain B
residue 131
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 401
source : AC4

24) chain B
residue 176
type
sequence E
description BINDING SITE FOR RESIDUE ZN B 401
source : AC4

25) chain B
residue 279
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 401
source : AC4

26) chain B
residue 159
type
sequence R
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

27) chain B
residue 161
type
sequence E
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

28) chain B
residue 168
type
sequence R
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

29) chain B
residue 169
type
sequence L
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

30) chain B
residue 172
type
sequence F
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

31) chain B
residue 174
type
sequence M
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

32) chain B
residue 235
type
sequence K
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

33) chain B
residue 237
type
sequence E
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

34) chain B
residue 250
type
sequence A
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

35) chain B
residue 251
type
sequence C
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

36) chain B
residue 252
type
sequence M
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

37) chain B
residue 253
type
sequence S
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

38) chain B
residue 283
type
sequence G
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

39) chain B
residue 286
type
sequence R
description BINDING SITE FOR RESIDUE ATP B 402
source : AC5

40) chain A
residue 303
type
sequence P
description BINDING SITE FOR RESIDUE SO4 B 403
source : AC6

41) chain B
residue 118
type
sequence S
description BINDING SITE FOR RESIDUE SO4 B 403
source : AC6

42) chain B
residue 29
type
sequence H
description BINDING SITE FOR RESIDUE ACT B 405
source : AC8

43) chain B
residue 30
type
sequence S
description BINDING SITE FOR RESIDUE ACT B 405
source : AC8

44) chain A
residue 132
type
sequence Y
description BINDING SITE FOR RESIDUE PNS C 1000
source : AC9

45) chain A
residue 215
type
sequence D
description BINDING SITE FOR RESIDUE PNS C 1000
source : AC9

46) chain A
residue 217
type
sequence F
description BINDING SITE FOR RESIDUE PNS C 1000
source : AC9

47) chain A
residue 229
type
sequence Q
description BINDING SITE FOR RESIDUE PNS C 1000
source : AC9

48) chain A
residue 232
type
sequence Q
description BINDING SITE FOR RESIDUE PNS C 1000
source : AC9

49) chain A
residue 255
type
sequence N
description BINDING SITE FOR RESIDUE PNS C 1000
source : AC9

50) chain A
residue 257
type
sequence H
description BINDING SITE FOR RESIDUE PNS C 1000
source : AC9

51) chain C
residue 41
type
sequence T
description BINDING SITE FOR RESIDUE PNS C 1000
source : AC9

52) chain C
residue 42
type
sequence S
description BINDING SITE FOR RESIDUE PNS C 1000
source : AC9

53) chain B
residue 131
type
sequence C
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC1

54) chain B
residue 132
type
sequence Y
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC1

55) chain B
residue 215
type
sequence D
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC1

56) chain B
residue 217
type
sequence F
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC1

57) chain B
residue 229
type
sequence Q
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC1

58) chain B
residue 232
type
sequence Q
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC1

59) chain B
residue 257
type
sequence H
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC1

60) chain B
residue 258
type
sequence R
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC1

61) chain B
residue 279
type
sequence C
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC1

62) chain D
residue 42
type
sequence S
description BINDING SITE FOR RESIDUE PNS D 1000
source : BC1

63) chain C
residue 42
type MOD_RES
sequence S
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

64) chain D
residue 42
type MOD_RES
sequence S
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

65) chain A
residue 161
type MOD_RES
sequence E
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

66) chain A
residue 168
type MOD_RES
sequence R
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

67) chain B
residue 131
type MOD_RES
sequence C
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

68) chain B
residue 159
type MOD_RES
sequence R
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

69) chain B
residue 161
type MOD_RES
sequence E
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

70) chain B
residue 168
type MOD_RES
sequence R
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

71) chain B
residue 176
type MOD_RES
sequence E
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

72) chain B
residue 235
type MOD_RES
sequence K
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

73) chain B
residue 250
type MOD_RES
sequence A
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

74) chain B
residue 279
type MOD_RES
sequence C
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

75) chain B
residue 286
type MOD_RES
sequence R
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

76) chain A
residue 176
type MOD_RES
sequence E
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

77) chain A
residue 235
type MOD_RES
sequence K
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

78) chain A
residue 250
type MOD_RES
sequence A
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

79) chain A
residue 279
type MOD_RES
sequence C
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1

80) chain A
residue 286
type MOD_RES
sequence R
description O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
source Swiss-Prot : SWS_FT_FI1


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