eF-site ID 4esv-F
PDB Code 4esv
Chain F

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Title A New Twist on the Translocation Mechanism of Helicases from the Structure of DnaB with its Substrates
Classification HYDROLASE/DNA
Compound 5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'
Source (4ESV)
Sequence F:  IPPQSIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAH
QKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVSY
LSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQD
GYTREDEIDVLLDEADRKIMEVSAFKNIKDILVQTYDNIE
MLITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFA
LNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINA
QNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSD
IRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVS
EISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDI
RESGSIEQDADIVAFLYRDDYYNKDSENKNIIEIIIAKQR
NGPVGTVQLAFIKEYNKFVNL
Description


Functional site

1) chain F
residue 419
type
sequence Q
description BINDING SITE FOR RESIDUE GDP A 502
source : AC2

2) chain F
residue 421
type
sequence N
description BINDING SITE FOR RESIDUE GDP A 502
source : AC2

3) chain F
residue 422
type
sequence G
description BINDING SITE FOR RESIDUE GDP A 502
source : AC2

4) chain F
residue 418
type
sequence K
description BINDING SITE FOR RESIDUE ALF A 504
source : AC4

5) chain F
residue 420
type
sequence R
description BINDING SITE FOR RESIDUE ALF A 504
source : AC4

6) chain F
residue 424
type
sequence V
description BINDING SITE FOR RESIDUE CA A 506
source : AC6

7) chain F
residue 212
type
sequence P
description BINDING SITE FOR RESIDUE ALF E 503
source : CC1

8) chain F
residue 213
type
sequence S
description BINDING SITE FOR RESIDUE ALF E 503
source : CC1

9) chain F
residue 216
type
sequence K
description BINDING SITE FOR RESIDUE ALF E 503
source : CC1

10) chain F
residue 241
type
sequence E
description BINDING SITE FOR RESIDUE ALF E 503
source : CC1

11) chain F
residue 362
type
sequence Q
description BINDING SITE FOR RESIDUE ALF E 503
source : CC1

12) chain F
residue 133
type
sequence E
description BINDING SITE FOR RESIDUE MES E 504
source : CC2

13) chain F
residue 213
type
sequence S
description BINDING SITE FOR RESIDUE GDP F 501
source : CC3

14) chain F
residue 214
type
sequence V
description BINDING SITE FOR RESIDUE GDP F 501
source : CC3

15) chain F
residue 215
type
sequence G
description BINDING SITE FOR RESIDUE GDP F 501
source : CC3

16) chain F
residue 216
type
sequence K
description BINDING SITE FOR RESIDUE GDP F 501
source : CC3

17) chain F
residue 217
type
sequence T
description BINDING SITE FOR RESIDUE GDP F 501
source : CC3

18) chain F
residue 218
type
sequence A
description BINDING SITE FOR RESIDUE GDP F 501
source : CC3

19) chain F
residue 242
type
sequence M
description BINDING SITE FOR RESIDUE GDP F 501
source : CC3

20) chain F
residue 250
type
sequence R
description BINDING SITE FOR RESIDUE GDP F 501
source : CC3

21) chain F
residue 261
type
sequence Q
description BINDING SITE FOR RESIDUE GDP F 501
source : CC3

22) chain F
residue 398
type
sequence R
description BINDING SITE FOR RESIDUE GDP F 501
source : CC3

23) chain F
residue 433
type
sequence K
description BINDING SITE FOR RESIDUE GDP F 501
source : CC3

24) chain F
residue 217
type
sequence T
description BINDING SITE FOR RESIDUE CA F 502
source : CC4

25) chain F
residue 241
type
sequence E
description BINDING SITE FOR RESIDUE CA F 502
source : CC4

26) chain F
residue 242
type
sequence M
description BINDING SITE FOR RESIDUE CA F 502
source : CC4

27) chain F
residue 320
type
sequence D
description BINDING SITE FOR RESIDUE CA F 502
source : CC4

28) chain F
residue 241
type ACT_SITE
sequence E
description Nucleophile => ECO:0000305|PubMed:12235389, ECO:0000305|PubMed:23022319
source Swiss-Prot : SWS_FT_FI1

29) chain F
residue 213
type BINDING
sequence S
description BINDING => ECO:0000305|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI2

30) chain F
residue 215
type BINDING
sequence G
description BINDING => ECO:0000305|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI2

31) chain F
residue 216
type BINDING
sequence K
description BINDING => ECO:0000305|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI2

32) chain F
residue 217
type BINDING
sequence T
description BINDING => ECO:0000305|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI2

33) chain F
residue 218
type BINDING
sequence A
description BINDING => ECO:0000305|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI2

34) chain F
residue 250
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI2

35) chain F
residue 418
type BINDING
sequence K
description BINDING => ECO:0000305|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI2

36) chain F
residue 419
type BINDING
sequence Q
description BINDING => ECO:0000305|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI2

37) chain F
residue 420
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI2

38) chain F
residue 362
type BINDING
sequence Q
description BINDING => ECO:0000305|PubMed:23022319
source Swiss-Prot : SWS_FT_FI3

39) chain F
residue 381
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI4

40) chain F
residue 382
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI4

41) chain F
residue 384
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:23022319, ECO:0007744|PDB:4ESV
source Swiss-Prot : SWS_FT_FI4

42) chain F
residue 362
type SITE
sequence Q
description Gamma-phosphate sensor => ECO:0000305|PubMed:12235389
source Swiss-Prot : SWS_FT_FI5


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