eF-site ID 4eok-ABCD
PDB Code 4eok
Chain A, B, C, D

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Title Thr 160 phosphorylated CDK2 H84S, Q85M, K89D - human cyclin A3 complex with the inhibitor NU6102
Classification Transferase/Transferase Inhibitor
Compound Cyclin-dependent kinase 2
Source Homo sapiens (Human) (CCNA2_HUMAN)
Sequence A:  SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLEG
VPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFL
SMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRV
LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEV
VTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALF
PGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKW
ARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH
PFFQDVTKPVPHLR
B:  VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAIL
VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQ
LVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM
EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAM
FLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPE
SLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYK
NSKYHGVSLLNPPETLNL
C:  LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL
DTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLY
LVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAF
CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR
TYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV
TRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYK
PSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISA
KAALAHPFFQDVTKPVPHLR
D:  PDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILV
DWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQL
VGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRME
HLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMF
LGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPES
LIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN
SKYHGVSLLNPPETLN
Description (1)  Cyclin-dependent kinase 2 (E.C.2.7.11.22), Cyclin-A2


Functional site

1) chain A
residue 12
type
sequence E
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

2) chain A
residue 31
type
sequence A
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

3) chain A
residue 64
type
sequence V
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

4) chain A
residue 80
type
sequence F
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

5) chain A
residue 81
type
sequence E
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

6) chain A
residue 83
type
sequence L
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

7) chain A
residue 84
type
sequence S
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

8) chain A
residue 85
type
sequence M
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

9) chain A
residue 86
type
sequence D
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

10) chain A
residue 89
type
sequence D
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

11) chain A
residue 132
type
sequence N
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

12) chain A
residue 134
type
sequence L
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

13) chain A
residue 145
type
sequence D
description BINDING SITE FOR RESIDUE 4SP A 301
source : AC1

14) chain B
residue 189
type
sequence M
description BINDING SITE FOR RESIDUE SGM B 501
source : AC2

15) chain B
residue 193
type
sequence C
description BINDING SITE FOR RESIDUE SGM B 501
source : AC2

16) chain C
residue 10
type
sequence I
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

17) chain C
residue 31
type
sequence A
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

18) chain C
residue 64
type
sequence V
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

19) chain C
residue 80
type
sequence F
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

20) chain C
residue 81
type
sequence E
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

21) chain C
residue 82
type
sequence F
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

22) chain C
residue 83
type
sequence L
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

23) chain C
residue 84
type
sequence S
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

24) chain C
residue 85
type
sequence M
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

25) chain C
residue 86
type
sequence D
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

26) chain C
residue 89
type
sequence D
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

27) chain C
residue 131
type
sequence Q
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

28) chain C
residue 132
type
sequence N
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

29) chain C
residue 134
type
sequence L
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

30) chain C
residue 145
type
sequence D
description BINDING SITE FOR RESIDUE 4SP C 301
source : AC3

31) chain D
residue 192
type
sequence K
description BINDING SITE FOR RESIDUE SGM D 501
source : AC4

32) chain D
residue 193
type
sequence C
description BINDING SITE FOR RESIDUE SGM D 501
source : AC4

33) chain D
residue 241
type
sequence R
description BINDING SITE FOR RESIDUE SGM D 501
source : AC4

34) chain D
residue 305
type
sequence D
description BINDING SITE FOR RESIDUE SGM D 501
source : AC4

35) chain A
residue 127
type ACT_SITE
sequence D
description Proton acceptor
source Swiss-Prot : SWS_FT_FI1

36) chain C
residue 127
type ACT_SITE
sequence D
description Proton acceptor
source Swiss-Prot : SWS_FT_FI1

37) chain A
residue 160
type MOD_RES
sequence X
description Phosphothreonine; by CAK and CCRK => ECO:0000269|PubMed:1396589, ECO:0000269|PubMed:14597612, ECO:0000269|PubMed:16325401, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:17570665, ECO:0000269|PubMed:20147522, ECO:0000269|PubMed:20360007, ECO:0000269|PubMed:21565702, ECO:0000305|PubMed:28666995
source Swiss-Prot : SWS_FT_FI10

38) chain C
residue 160
type MOD_RES
sequence X
description Phosphothreonine; by CAK and CCRK => ECO:0000269|PubMed:1396589, ECO:0000269|PubMed:14597612, ECO:0000269|PubMed:16325401, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:17570665, ECO:0000269|PubMed:20147522, ECO:0000269|PubMed:20360007, ECO:0000269|PubMed:21565702, ECO:0000305|PubMed:28666995
source Swiss-Prot : SWS_FT_FI10

39) chain B
residue 211-242
type prosite
sequence RAILVDWLVEVGEEYKLQNETLHLAVNYIDRF
description CYCLINS Cyclins signature. RaiLvdWLvevgeeykLqnetLhlAVnYIDRF
source prosite : PS00292

40) chain A
residue 10-33
type prosite
sequence IGEGTYGVVYKARNKLTGEVVALK
description PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. IGEGTYGVVYkArnkltgev..........VALK
source prosite : PS00107

41) chain A
residue 123-135
type prosite
sequence VLHRDLKPQNLLI
description PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. VlHrDLKpqNLLI
source prosite : PS00108

42) chain A
residue 132
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI3

43) chain A
residue 145
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI3

44) chain C
residue 132
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI3

45) chain C
residue 145
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI3

46) chain A
residue 9
type SITE
sequence K
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

47) chain A
residue 88
type SITE
sequence K
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

48) chain A
residue 166
type SITE
sequence L
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

49) chain C
residue 9
type SITE
sequence K
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

50) chain C
residue 88
type SITE
sequence K
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

51) chain C
residue 166
type SITE
sequence L
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

52) chain A
residue 6
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI6

53) chain C
residue 6
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI6

54) chain A
residue 14
type MOD_RES
sequence T
description Phosphothreonine => ECO:0000269|PubMed:1396589, ECO:0000269|PubMed:17095507
source Swiss-Prot : SWS_FT_FI7

55) chain C
residue 14
type MOD_RES
sequence T
description Phosphothreonine => ECO:0000269|PubMed:1396589, ECO:0000269|PubMed:17095507
source Swiss-Prot : SWS_FT_FI7

56) chain A
residue 15
type MOD_RES
sequence Y
description Phosphotyrosine; by WEE1 => ECO:0000269|PubMed:1396589, ECO:0000269|PubMed:17095507, ECO:0007744|PubMed:19690332
source Swiss-Prot : SWS_FT_FI8

57) chain C
residue 15
type MOD_RES
sequence Y
description Phosphotyrosine; by WEE1 => ECO:0000269|PubMed:1396589, ECO:0000269|PubMed:17095507, ECO:0007744|PubMed:19690332
source Swiss-Prot : SWS_FT_FI8

58) chain A
residue 19
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0007744|PubMed:19369195
source Swiss-Prot : SWS_FT_FI9

59) chain C
residue 19
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0007744|PubMed:19369195
source Swiss-Prot : SWS_FT_FI9

60) chain C
residue 129
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

61) chain A
residue 81
type BINDING
sequence E
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

62) chain A
residue 86
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

63) chain A
residue 129
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

64) chain C
residue 10
type BINDING
sequence I
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

65) chain C
residue 33
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

66) chain C
residue 81
type BINDING
sequence E
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

67) chain C
residue 86
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

68) chain A
residue 10
type BINDING
sequence I
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

69) chain A
residue 33
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

70) chain A
residue 1
type MOD_RES
sequence M
description N-acetylmethionine => ECO:0007744|PubMed:22814378
source Swiss-Prot : SWS_FT_FI5

71) chain C
residue 1
type MOD_RES
sequence M
description N-acetylmethionine => ECO:0007744|PubMed:22814378
source Swiss-Prot : SWS_FT_FI5


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