eF-site ID 4da4-B
PDB Code 4da4
Chain B

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Title Structure of mouse DNMT1 (731-1602) bound to hemimethylated CpG DNA
Classification Transferase/DNA
Compound DNA (cytosine-5)-methyltransferase 1
Source Mus musculus (Mouse) (4DA4)
Sequence B:  DRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPD
DSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGAT
SDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGG
GKTYFFQLWYNQEYARFESPPKTQPTEDNKHKFCLSCIRL
AELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSV
YLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDY
IKGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYK
FYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRC
TVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPP
NHARSPGNIKLPKLRTLDVFSGCGGLSEGFHQAGISETLW
AIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTN
SLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKN
SLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLR
CLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLP
LFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTI
TVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLRGSHY
QPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVR
LGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACD
PESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTT
VTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFF
GNILDRHRQVGNAVPPPLAKAIGLEIKLCLLS
Description


Functional site

1) chain B
residue 1148
type
sequence F
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

2) chain B
residue 1149
type
sequence S
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

3) chain B
residue 1150
type
sequence G
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

4) chain B
residue 1152
type
sequence G
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

5) chain B
residue 1153
type
sequence G
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

6) chain B
residue 1154
type
sequence L
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

7) chain B
residue 1171
type
sequence E
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

8) chain B
residue 1172
type
sequence M
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

9) chain B
residue 1173
type
sequence W
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

10) chain B
residue 1193
type
sequence D
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

11) chain B
residue 1194
type
sequence C
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

12) chain B
residue 1226
type
sequence G
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

13) chain B
residue 1247
type
sequence K
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

14) chain B
residue 1250
type
sequence L
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

15) chain B
residue 1581
type
sequence A
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

16) chain B
residue 1582
type
sequence V
description BINDING SITE FOR RESIDUE SAH B 1701
source : AC4

17) chain B
residue 1479
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1702
source : AC5

18) chain B
residue 1481
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1702
source : AC5

19) chain B
residue 1487
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1702
source : AC5

20) chain B
residue 1504
type
sequence H
description BINDING SITE FOR RESIDUE ZN B 1702
source : AC5

21) chain B
residue 796
type
sequence H
description BINDING SITE FOR RESIDUE ZN B 1703
source : AC6

22) chain B
residue 823
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1703
source : AC6

23) chain B
residue 897
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1703
source : AC6

24) chain B
residue 900
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1703
source : AC6

25) chain B
residue 1566
type
sequence R
description BINDING SITE FOR RESIDUE CIT B 1704
source : AC7

26) chain B
residue 1567
type
sequence F
description BINDING SITE FOR RESIDUE CIT B 1704
source : AC7

27) chain B
residue 1568
type
sequence F
description BINDING SITE FOR RESIDUE CIT B 1704
source : AC7

28) chain B
residue 1569
type
sequence G
description BINDING SITE FOR RESIDUE CIT B 1704
source : AC7

29) chain B
residue 1574
type
sequence R
description BINDING SITE FOR RESIDUE CIT B 1704
source : AC7

30) chain B
residue 1229
type ACT_SITE
sequence C
description ACT_SITE => ECO:0000269|PubMed:17576694
source Swiss-Prot : SWS_FT_FI1

31) chain B
residue 1149
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:21163962, ECO:0007744|PDB:3PT6, ECO:0007744|PDB:4DA4
source Swiss-Prot : SWS_FT_FI2

32) chain B
residue 1153
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:21163962, ECO:0007744|PDB:3PT6, ECO:0007744|PDB:3PT9, ECO:0007744|PDB:4DA4
source Swiss-Prot : SWS_FT_FI3

33) chain B
residue 1171
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:21163962, ECO:0007744|PDB:3PT6, ECO:0007744|PDB:3PT9, ECO:0007744|PDB:4DA4
source Swiss-Prot : SWS_FT_FI3

34) chain B
residue 1582
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:21163962, ECO:0007744|PDB:3PT6, ECO:0007744|PDB:3PT9, ECO:0007744|PDB:4DA4
source Swiss-Prot : SWS_FT_FI3

35) chain B
residue 1193
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:21163962, ECO:0007744|PDB:3PT6, ECO:0007744|PDB:3PT9
source Swiss-Prot : SWS_FT_FI4

36) chain B
residue 735
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P26358
source Swiss-Prot : SWS_FT_FI5

37) chain B
residue 882
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P26358
source Swiss-Prot : SWS_FT_FI5

38) chain B
residue 752
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P26358
source Swiss-Prot : SWS_FT_FI6

39) chain B
residue 895
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P26358
source Swiss-Prot : SWS_FT_FI6

40) chain B
residue 961
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P26358
source Swiss-Prot : SWS_FT_FI6

41) chain B
residue 965
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P26358
source Swiss-Prot : SWS_FT_FI6

42) chain B
residue 979
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P26358
source Swiss-Prot : SWS_FT_FI6

43) chain B
residue 1352
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P26358
source Swiss-Prot : SWS_FT_FI6

44) chain B
residue 1418
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P26358
source Swiss-Prot : SWS_FT_FI6


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