eF-site ID
|
4d6n-ABCDEFGHIJKLMNO |
PDB Code
|
4d6n |
Chain
|
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O |
|
click to enlarge
|
|
Title
|
THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MG (STATE 7) |
Classification
|
HYDROLASE/DNA |
Compound
|
HOMING ENDONUCLEASE I-DMOI |
Source
|
Desulfurococcus mobilis (4D6N) |
|
Sequence
|
A: |
ENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKS
ENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSS
KKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKR
LRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLN
ISLRDRIKFVHTILSSHLNPLPP
|
B: |
GCCTTGCCGGGTAA
|
C: |
GTTCCGGCGCG
|
D: |
CGCGCCGGAACTTAC
|
E: |
CCGGCAAGGC
|
F: |
ENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKS
ENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSS
KKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKR
LRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLN
ISLRDRIKFVHTILSSHLNPLPPEAAALEHH
|
G: |
GCCTTGCCGGGTAA
|
H: |
GTTCCGGCGCG
|
I: |
CGCGCCGGAACTTAC
|
J: |
CCGGCAAGGC
|
K: |
NVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSE
NLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSK
KLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRL
RIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNI
SLRDRIKFVHTILSSHL
|
L: |
GCCTTGCCGGGTAA
|
M: |
GTTCCGGCGCG
|
N: |
CGCGCCGGAACTTAC
|
O: |
CCGGCAAGGC
|
|
Description
|
|
|
|
1)
|
chain |
A |
residue |
182 |
type |
|
sequence |
L
|
description |
BINDING SITE FOR RESIDUE ACT A 1190
|
source |
: AC1
|
|
2)
|
chain |
A |
residue |
183 |
type |
|
sequence |
N
|
description |
BINDING SITE FOR RESIDUE ACT A 1190
|
source |
: AC1
|
|
3)
|
chain |
A |
residue |
99 |
type |
|
sequence |
R
|
description |
BINDING SITE FOR RESIDUE ACT A 1191
|
source |
: AC2
|
|
4)
|
chain |
F |
residue |
114 |
type |
|
sequence |
Y
|
description |
BINDING SITE FOR RESIDUE ACT F 1198
|
source |
: AC3
|
|
5)
|
chain |
F |
residue |
186 |
type |
|
sequence |
P
|
description |
BINDING SITE FOR RESIDUE ACT F 1198
|
source |
: AC3
|
|
6)
|
chain |
F |
residue |
188 |
type |
|
sequence |
E
|
description |
BINDING SITE FOR RESIDUE ACT F 1198
|
source |
: AC3
|
|
7)
|
chain |
A |
residue |
20 |
type |
|
sequence |
G
|
description |
BINDING SITE FOR RESIDUE MG A 1188
|
source |
: AC4
|
|
8)
|
chain |
A |
residue |
117 |
type |
|
sequence |
E
|
description |
BINDING SITE FOR RESIDUE MG A 1188
|
source |
: AC4
|
|
9)
|
chain |
A |
residue |
129 |
type |
|
sequence |
N
|
description |
BINDING SITE FOR RESIDUE MG A 1188
|
source |
: AC4
|
|
10)
|
chain |
C |
residue |
15 |
type |
|
sequence |
G
|
description |
BINDING SITE FOR RESIDUE MG A 1188
|
source |
: AC4
|
|
11)
|
chain |
D |
residue |
15 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE MG A 1188
|
source |
: AC4
|
|
12)
|
chain |
K |
residue |
19 |
type |
|
sequence |
I
|
description |
BINDING SITE FOR RESIDUE MG K 1183
|
source |
: AC5
|
|
13)
|
chain |
K |
residue |
20 |
type |
|
sequence |
G
|
description |
BINDING SITE FOR RESIDUE MG K 1183
|
source |
: AC5
|
|
14)
|
chain |
K |
residue |
117 |
type |
|
sequence |
E
|
description |
BINDING SITE FOR RESIDUE MG K 1183
|
source |
: AC5
|
|
15)
|
chain |
M |
residue |
15 |
type |
|
sequence |
G
|
description |
BINDING SITE FOR RESIDUE MG K 1183
|
source |
: AC5
|
|
16)
|
chain |
N |
residue |
15 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE MG K 1183
|
source |
: AC5
|
|
17)
|
chain |
A |
residue |
21 |
type |
|
sequence |
D
|
description |
BINDING SITE FOR RESIDUE MG A 1189
|
source |
: AC6
|
|
18)
|
chain |
A |
residue |
116 |
type |
|
sequence |
A
|
description |
BINDING SITE FOR RESIDUE MG A 1189
|
source |
: AC6
|
|
19)
|
chain |
B |
residue |
14 |
type |
|
sequence |
A
|
description |
BINDING SITE FOR RESIDUE MG A 1189
|
source |
: AC6
|
|
20)
|
chain |
E |
residue |
16 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE MG A 1189
|
source |
: AC6
|
|
21)
|
chain |
F |
residue |
21 |
type |
|
sequence |
D
|
description |
BINDING SITE FOR RESIDUE MG F 1196
|
source |
: AC7
|
|
22)
|
chain |
F |
residue |
116 |
type |
|
sequence |
A
|
description |
BINDING SITE FOR RESIDUE MG F 1196
|
source |
: AC7
|
|
23)
|
chain |
F |
residue |
120 |
type |
|
sequence |
K
|
description |
BINDING SITE FOR RESIDUE MG F 1196
|
source |
: AC7
|
|
24)
|
chain |
G |
residue |
14 |
type |
|
sequence |
A
|
description |
BINDING SITE FOR RESIDUE MG F 1196
|
source |
: AC7
|
|
25)
|
chain |
J |
residue |
16 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE MG F 1196
|
source |
: AC7
|
|
26)
|
chain |
F |
residue |
19 |
type |
|
sequence |
I
|
description |
BINDING SITE FOR RESIDUE MG F 1197
|
source |
: AC8
|
|
27)
|
chain |
F |
residue |
20 |
type |
|
sequence |
G
|
description |
BINDING SITE FOR RESIDUE MG F 1197
|
source |
: AC8
|
|
28)
|
chain |
F |
residue |
117 |
type |
|
sequence |
E
|
description |
BINDING SITE FOR RESIDUE MG F 1197
|
source |
: AC8
|
|
29)
|
chain |
H |
residue |
15 |
type |
|
sequence |
G
|
description |
BINDING SITE FOR RESIDUE MG F 1197
|
source |
: AC8
|
|
30)
|
chain |
I |
residue |
15 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE MG F 1197
|
source |
: AC8
|
|
31)
|
chain |
K |
residue |
21 |
type |
|
sequence |
D
|
description |
BINDING SITE FOR RESIDUE MG K 1184
|
source |
: AC9
|
|
32)
|
chain |
K |
residue |
116 |
type |
|
sequence |
A
|
description |
BINDING SITE FOR RESIDUE MG K 1184
|
source |
: AC9
|
|
33)
|
chain |
K |
residue |
120 |
type |
|
sequence |
K
|
description |
BINDING SITE FOR RESIDUE MG K 1184
|
source |
: AC9
|
|
34)
|
chain |
L |
residue |
14 |
type |
|
sequence |
A
|
description |
BINDING SITE FOR RESIDUE MG K 1184
|
source |
: AC9
|
|
35)
|
chain |
O |
residue |
16 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE MG K 1184
|
source |
: AC9
|
|
36)
|
chain |
A |
residue |
21 |
type |
ACT_SITE |
sequence |
D
|
description |
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
37)
|
chain |
A |
residue |
117 |
type |
ACT_SITE |
sequence |
E
|
description |
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
38)
|
chain |
F |
residue |
21 |
type |
ACT_SITE |
sequence |
D
|
description |
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
39)
|
chain |
F |
residue |
117 |
type |
ACT_SITE |
sequence |
E
|
description |
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
40)
|
chain |
K |
residue |
21 |
type |
ACT_SITE |
sequence |
D
|
description |
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
41)
|
chain |
K |
residue |
117 |
type |
ACT_SITE |
sequence |
E
|
description |
|
source |
Swiss-Prot : SWS_FT_FI1
|
|