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eF-site ID
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4d61-O |
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PDB Code
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4d61 |
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Chain
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O |
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click to enlarge
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Title
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Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state |
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Classification
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RIBOSOME |
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Compound
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18S RRNA |
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Source
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ORGANISM_COMMON: RABBIT; ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; |
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Sequence
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O: |
ISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETIC
RVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALH
IKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTP
IPSDSTRRKGGRRGRRL
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Description
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(1) |
40S RIBOSOMAL PROTEIN SA, 40S RIBOSOMAL PROTEIN S3A, 40S RIBOSOMAL PROTEIN S2, 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1, 40S RIBOSOMAL PROTEIN S5, 40S RIBOSOMAL PROTEIN S6, 40S RIBOSOMAL PROTEIN S7, 40S RIBOSOMAL PROTEIN S8, 40S RIBOSOMAL PROTEIN S9, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, 40S RIBOSOMAL PROTEIN S12, 40S RIBOSOMAL PROTEIN S13, 40S RIBOSOMAL PROTEIN S14, 40S RIBOSOMAL PROTEIN S15, 40S RIBOSOMAL PROTEIN S16, 40S RIBOSOMAL PROTEIN S17, 40S RIBOSOMAL PROTEIN S18, 40S RIBOSOMAL PROTEIN S19, 40S RIBOSOMAL PROTEIN S20, 40S RIBOSOMAL PROTEIN S21, 40S RIBOSOMAL PROTEIN S15A, 40S RIBOSOMAL PROTEIN S23, 40S RIBOSOMAL PROTEIN S24, 40S RIBOSOMAL PROTEIN S25, 40S RIBOSOMAL PROTEIN S26, 40S RIBOSOMAL PROTEIN S27, 40S RIBOSOMAL PROTEIN S28, 40S RIBOSOMAL PROTEIN S29, 40S RIBOSOMAL PROTEIN S30, UBIQUITIN-40S RIBOSOMAL PROTEIN S27A, GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1, EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1, EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT ERF3A/RNA Complex
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Functional site
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1)
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chain |
O |
| residue |
116-138 |
| type |
prosite |
| sequence |
LRALARSGMKIGRIEDVTPIPSD
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| description |
RIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GMkIgrieDvTPiPSD
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| source |
prosite : PS00054
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2)
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chain |
O |
| residue |
63 |
| type |
SITE |
| sequence |
K
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| description |
Essential for function => ECO:0000250|UniProtKB:P62979
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| source |
Swiss-Prot : SWS_FT_FI3
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3)
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chain |
O |
| residue |
106 |
| type |
SITE |
| sequence |
K
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| description |
Essential for function => ECO:0000250|UniProtKB:P62979
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| source |
Swiss-Prot : SWS_FT_FI3
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