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eF-site ID
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4d5l-D |
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PDB Code
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4d5l |
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Chain
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D |
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click to enlarge
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Title
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Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state |
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Classification
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RIBOSOME |
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Compound
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18S RRNA 2 |
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Source
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ORGANISM_COMMON: RABBIT; ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; |
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Sequence
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D: |
AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRV
TPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPE
GSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG
VLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSG
DPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPK
KPLPDHVSIVEP
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Description
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(1) |
40S RIBOSOMAL PROTEIN ES26, 40S RIBOSOMAL PROTEIN ES27, 40S RIBOSOMAL PROTEIN ES28, 40S RIBOSOMAL PROTEIN US14, 40S RIBOSOMAL PROTEIN ES30, 40S RIBOSOMAL PROTEIN ES31, 40S RIBOSOMAL PROTEIN RACK1, 40S RIBOSOMAL PROTEIN ES7, 40S RIBOSOMAL PROTEIN ES8, 40S RIBOSOMAL PROTEIN US4, 40S RIBOSOMAL PROTEIN ES10, 40S RIBOSOMAL PROTEIN US17, 40S RIBOSOMAL PROTEIN ES12, 40S RIBOSOMAL PROTEIN US15, 40S RIBOSOMAL PROTEIN US11, 40S RIBOSOMAL PROTEIN US19, 40S RIBOSOMAL PROTEIN US9, 40S RIBOSOMAL PROTEIN ES17, 40S RIBOSOMAL PROTEIN US13, 40S RIBOSOMAL PROTEIN ES19, 40S RIBOSOMAL PROTEIN US10, 40S RIBOSOMAL PROTEIN ES21, 40S RIBOSOMAL PROTEIN US8, 40S RIBOSOMAL PROTEIN US12, 40S RIBOSOMAL PROTEIN ES24, 40S RIBOSOMAL PROTEIN ES25, 40S RIBOSOMAL PROTEIN US2, 40S RIBOSOMAL PROTEIN US5, 40S RIBOSOMAL PROTEIN US3, 40S RIBOSOMAL PROTEIN ES4, 40S RIBOSOMAL PROTEIN US7, 40S RIBOSOMAL PROTEIN ES6/RNA Complex
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Functional site
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1)
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chain |
D |
| residue |
204 |
| type |
MOD_RES |
| sequence |
L
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| description |
N6-succinyllysine => ECO:0000250|UniProtKB:P62862
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| source |
Swiss-Prot : SWS_FT_FI1
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2)
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chain |
D |
| residue |
171 |
| type |
MOD_RES |
| sequence |
A
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| description |
N6-succinyllysine => ECO:0000250|UniProtKB:Q9CZX8
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| source |
Swiss-Prot : SWS_FT_FI4
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3)
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chain |
D |
| residue |
52 |
| type |
CROSSLNK |
| sequence |
A
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| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P23396
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| source |
Swiss-Prot : SWS_FT_FI6
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4)
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chain |
D |
| residue |
164 |
| type |
CROSSLNK |
| sequence |
V
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| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P23396
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| source |
Swiss-Prot : SWS_FT_FI6
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5)
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chain |
D |
| residue |
192 |
| type |
CROSSLNK |
| sequence |
W
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| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0000250|UniProtKB:P23396
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| source |
Swiss-Prot : SWS_FT_FI7
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6)
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chain |
D |
| residue |
176 |
| type |
CROSSLNK |
| sequence |
L
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| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P23396
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| source |
Swiss-Prot : SWS_FT_FI8
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7)
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chain |
D |
| residue |
147-183 |
| type |
prosite |
| sequence |
AKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG
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| description |
RIBOSOMAL_S3 Ribosomal protein S3 signature. AKsmkfvdGlMihSgdpVnyyVDtavrhvlLrqGvlG
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| source |
prosite : PS00548
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