|
eF-site ID
|
4c3h-B |
PDB Code
|
4c3h |
Chain
|
B |
|
click to enlarge
|
|
Title
|
Structure of 14-subunit RNA polymerase I at 3.27 A resolution, crystal form C2-93 |
Classification
|
TRANSCRIPTION |
Compound
|
DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190 |
Source
|
ORGANISM_COMMON: BAKER'S YEAST; ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; |
|
Sequence
|
B: |
RTADFRTLERESRFINPPKDKSAFPLLQEAVQPHIGSFNA
LTEGPDGGLLNLGVKDIGEKVIFDGKPLNSEEISNSGYLG
NKLSVSVEQVSIAKPMSNDSAVERKVYPSESRQRLTSYRG
KLLLKLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKM
SPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPM
AIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLND
GQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGN
DVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFR
VVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLL
FMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE
KIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNE
NIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYR
FISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPD
GSPCGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASH
TFAAGPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEG
KTPGLPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPVRY
LPLDKEDIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPTN
ILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCH
RSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAV
ISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALDP
ITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICA
YFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQT
VSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSE
TGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQD
STPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGE
ELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPV
KGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQ
ASVCRECGSILTTQQSVPRIGSISTVCCRRCSMRFEDAKK
GEKIFIDDSQIWEDGQGNKFVGGNETTTVAIPFVLKYLDS
ELSAMGIRLRYNVEPK
|
|
Description
|
(1) |
DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190 (E.C.2.7.7.6), DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA135 (E.C.2.7.7.6), DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA14, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5, DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA34
|
|
Functional site
|
|
1)
|
chain |
B |
residue |
1104 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2204
|
source |
: AC3
|
|
2)
|
chain |
B |
residue |
1107 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2204
|
source |
: AC3
|
|
3)
|
chain |
B |
residue |
1128 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2204
|
source |
: AC3
|
|
4)
|
chain |
B |
residue |
1131 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2204
|
source |
: AC3
|
|
5)
|
chain |
B |
residue |
1156 |
type |
MOD_RES |
sequence |
S
|
description |
Phosphoserine => ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
6)
|
chain |
B |
residue |
914-926 |
type |
prosite |
sequence |
GDKFSSRHGQKGV
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFSSrHGQKGV
|
source |
prosite : PS01166
|
|
|
|