eF-site ID 4b3s-BCDEFGHIJKLMNOPQRSTV
PDB Code 4b3s
Chain B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, V

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Title Crystal structure of the 30S ribosome in complex with compound 37
Classification RIBOSOME
Compound 16S RIBOSOMAL RNA
Source ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8;
Sequence B:  VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQK
TMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAE
RAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPE
IEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVD
PTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDD
AIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQE
C:  GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRG
LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGG
ERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVA
EQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAE
QARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAY
IFLGEVI
D:  GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPG
QHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEE
ASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLV
RHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQN
LEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQ
LVIEFYSR
E:  DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLG
FGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEF
GASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELG
SRNPINIAYATMEALRQLRTKADVERLRKGE
F:  MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKV
EELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR
IRDNVRRVMVVKSQEPFLANA
G:  ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAAR
IFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVG
GANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIA
HELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW
H:  MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILA
REGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVI
HHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLT
DREARKLGVGGELICEVW
I:  EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLV
RAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGI
ARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARR
APQYSKR
J:  KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPT
RVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTI
EQLMTLDLPTGVEIEIKTV
K:  KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGY
KGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAG
REQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS
L:  PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVT
PKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL
IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKK
PKEAA
M:  ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINP
ATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRL
MDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKK
KAPRK
N:  ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCR
ICLRELAHKGQLPGVRKASW
O:  PITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSE
HLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRAL
IEKLGIRG
P:  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYD
PRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVF
RQEA
Q:  PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKK
YLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGR
MDLVEKYLIRRQNYQSLSKRGGKA
R:  PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRR
TGLSGKEQRILAKTIKRARILGLLPFTEKLVRK
S:  PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIV
PEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYR
G
T:  RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEG
KAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK
VRQLLEAAGAPLIGGGLSA
V:  GKGDRRTRRGKIWRGTYGKYRPRKK
Description


Functional site

1) chain V
residue 4
type
sequence D
description BINDING SITE FOR RESIDUE MG A 2616
source : HC6

2) chain L
residue 44
type
sequence P
description BINDING SITE FOR RESIDUE MG A 2624
source : IC5

3) chain L
residue 45
type
sequence N
description BINDING SITE FOR RESIDUE MG A 2625
source : IC6

4) chain Q
residue 64
type
sequence I
description BINDING SITE FOR RESIDUE MG A 2627
source : IC8

5) chain L
residue 11
type
sequence R
description BINDING SITE FOR RESIDUE MG A 2637
source : JC9

6) chain Q
residue 31
type
sequence Y
description BINDING SITE FOR RESIDUE MG A 2637
source : JC9

7) chain J
residue 55
type
sequence K
description BINDING SITE FOR RESIDUE MG A 2641
source : KC4

8) chain S
residue 80
type
sequence R
description BINDING SITE FOR RESIDUE MG A 2643
source : KC6

9) chain Q
residue 38
type
sequence S
description BINDING SITE FOR RESIDUE MG A 2651
source : LC5

10) chain Q
residue 66
type
sequence K
description BINDING SITE FOR RESIDUE MG A 2652
source : LC6

11) chain M
residue 100
type
sequence Q
description BINDING SITE FOR RESIDUE MG A 2664
source : MC9

12) chain G
residue 105
type
sequence Q
description BINDING SITE FOR RESIDUE MG A 2669
source : NC5

13) chain T
residue 28
type
sequence T
description BINDING SITE FOR RESIDUE MG A 2705
source : QC9

14) chain L
residue 40
type
sequence T
description BINDING SITE FOR RESIDUE RPO A 2800
source : RC2

15) chain B
residue 90
type
sequence R
description BINDING SITE FOR RESIDUE MG B 1235
source : RC3

16) chain D
residue 8
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 1209
source : RC4

17) chain D
residue 11
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 1209
source : RC4

18) chain D
residue 18
type
sequence L
description BINDING SITE FOR RESIDUE ZN D 1209
source : RC4

19) chain D
residue 25
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 1209
source : RC4

20) chain D
residue 30
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 1209
source : RC4

21) chain E
residue 64
type
sequence E
description BINDING SITE FOR RESIDUE MG E 1151
source : RC5

22) chain E
residue 66
type
sequence P
description BINDING SITE FOR RESIDUE MG E 1151
source : RC5

23) chain F
residue 80
type
sequence R
description BINDING SITE FOR RESIDUE MG F 1102
source : RC6

24) chain F
residue 82
type
sequence R
description BINDING SITE FOR RESIDUE MG F 1102
source : RC6

25) chain F
residue 85
type
sequence V
description BINDING SITE FOR RESIDUE MG F 1102
source : RC6

26) chain H
residue 14
type
sequence R
description BINDING SITE FOR RESIDUE MG H 1139
source : RC7

27) chain H
residue 82
type
sequence H
description BINDING SITE FOR RESIDUE MG H 1139
source : RC7

28) chain H
residue 83
type
sequence I
description BINDING SITE FOR RESIDUE MG H 1139
source : RC7

29) chain K
residue 16
type
sequence N
description BINDING SITE FOR RESIDUE MG K 1120
source : RC8

30) chain K
residue 42
type
sequence G
description BINDING SITE FOR RESIDUE MG K 1120
source : RC8

31) chain K
residue 110
type
sequence R
description BINDING SITE FOR RESIDUE MG K 1121
source : RC9

32) chain L
residue 39
type
sequence V
description BINDING SITE FOR RESIDUE MG L 1125
source : SC1

33) chain L
residue 40
type
sequence T
description BINDING SITE FOR RESIDUE MG L 1125
source : SC1

34) chain L
residue 20
type
sequence V
description BINDING SITE FOR RESIDUE MG L 1126
source : SC2

35) chain L
residue 22
type
sequence A
description BINDING SITE FOR RESIDUE MG L 1126
source : SC2

36) chain L
residue 26
type
sequence A
description BINDING SITE FOR RESIDUE MG L 1126
source : SC2

37) chain M
residue 19
type
sequence T
description BINDING SITE FOR RESIDUE MG M 1126
source : SC3

38) chain M
residue 21
type
sequence I
description BINDING SITE FOR RESIDUE MG M 1126
source : SC3

39) chain M
residue 22
type
sequence Y
description BINDING SITE FOR RESIDUE MG M 1126
source : SC3

40) chain M
residue 24
type
sequence I
description BINDING SITE FOR RESIDUE MG M 1126
source : SC3

41) chain N
residue 23
type
sequence C
description BINDING SITE FOR RESIDUE ZN N 1061
source : SC4

42) chain N
residue 26
type
sequence C
description BINDING SITE FOR RESIDUE ZN N 1061
source : SC4

43) chain N
residue 28
type
sequence R
description BINDING SITE FOR RESIDUE ZN N 1061
source : SC4

44) chain N
residue 39
type
sequence C
description BINDING SITE FOR RESIDUE ZN N 1061
source : SC4

45) chain N
residue 42
type
sequence C
description BINDING SITE FOR RESIDUE ZN N 1061
source : SC4

46) chain T
residue 4
type
sequence S
description BINDING SITE FOR RESIDUE MG T 1100
source : SC5

47) chain T
residue 5
type
sequence A
description BINDING SITE FOR RESIDUE MG T 1100
source : SC5

48) chain G
residue 19-45
type prosite
sequence DVLVTAFINKIMRDGKKNLAARIFYDA
description RIBOSOMAL_S7 Ribosomal protein S7 signature. DvLvtaFInkimrdGKKnlaarIFydA
source prosite : PS00052

49) chain H
residue 108-125
type prosite
sequence GIAILSTSKGVLTDREAR
description RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaILSTSkGVLtdreAR
source prosite : PS00053

50) chain K
residue 85-107
type prosite
sequence IRALQASGLQVKSIVDDTPVPHN
description RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaS.GLqVksivDdTPvPHN
source prosite : PS00054

51) chain L
residue 42-49
type prosite
sequence KKPNSALR
description RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
source prosite : PS00055

52) chain Q
residue 53-65
type prosite
sequence GDVVEIIESRPIS
description RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIiEsRPIS
source prosite : PS00056

53) chain R
residue 17-40
type prosite
sequence RDYRNVEVLKRFLSETGKILPRRR
description RIBOSOMAL_S18 Ribosomal protein S18 signature. RDYrn.VevLkrFLSEt.GKIlprRR
source prosite : PS00057

54) chain R
residue 51-66
type prosite
sequence LAKTIKRARILGLLPF
description ALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LAKTIKraRIlGLlPF
source prosite : PS00063

55) chain S
residue 52-76
type prosite
sequence NGKQHVPVYITENMVGHKLGEFAPT
description RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqhvpvyItenmVGhkLGEFapT
source prosite : PS00323

56) chain I
residue 66-84
type prosite
sequence GGGKSGQIDAIKLGIARAL
description RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGksGQidAiklGiARAL
source prosite : PS00360

57) chain J
residue 25-40
type prosite
sequence ARRSGAQVSGPIPLPT
description RIBOSOMAL_S10 Ribosomal protein S10 signature. ArrsGAqvsGPIpLPT
source prosite : PS00361

58) chain O
residue 38-68
type prosite
sequence LSEHLKVHKKDHHSHRGLLMMVGQRRRLLRY
description RIBOSOMAL_S15 Ribosomal protein S15 signature. LseHLkvhKkDhhShrgLlmMvgqrrrLlrY
source prosite : PS00362

59) chain N
residue 22-44
type prosite
sequence RCVRCGRARSVYRFFGLCRICLR
description RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvrcgrarsvyrfFGLCRiCLR
source prosite : PS00527

60) chain C
residue 162-196
type prosite
sequence ARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLG
description RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewaaqGrVplHt..LranIDygfalarTtyGvlG
source prosite : PS00548

61) chain E
residue 19-51
type prosite
sequence GRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAV
description RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFgAlvVVGDrq.GrVGlGfgkap.EVpl.AV
source prosite : PS00585

62) chain D
residue 96-120
type prosite
sequence LESRLDNVVYRLGFAVSRRQARQLV
description RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV
source prosite : PS00632

63) chain M
residue 87-100
type prosite
sequence RGLRHRRGLPVRGQ
description RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ
source prosite : PS00646

64) chain B
residue 1-12
type prosite
sequence VKELLEAGVHFG
description RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkELLEAGVHFG
source prosite : PS00962

65) chain F
residue 44-53
type prosite
sequence GLRRLAYPIA
description RIBOSOMAL_S6 Ribosomal protein S6 signature. GlRRLAYpIA
source prosite : PS01048

66) chain N
residue 23
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:11866529
source Swiss-Prot : SWS_FT_FI1

67) chain N
residue 26
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:11866529
source Swiss-Prot : SWS_FT_FI1

68) chain N
residue 39
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:11866529
source Swiss-Prot : SWS_FT_FI1

69) chain N
residue 42
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:11866529
source Swiss-Prot : SWS_FT_FI1


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