eF-site ID 4aw0-A
PDB Code 4aw0
Chain A

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Title Human PDK1 Kinase Domain in Complex with Allosteric Compound PS182 Bound to the PIF-Pocket
Classification TRANSFERASE
Compound 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1
Source Homo sapiens (Human) (PDPK1_HUMAN)
Sequence A:  RKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILE
KRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEK
LYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALE
YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPES
KQARANXFVGTAQYVSPELLTEKSAXKSSDLWALGCIIYQ
LVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVE
KLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQT
PPKLT
Description


Functional site

1) chain A
residue 89
type
sequence G
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

2) chain A
residue 91
type
sequence G
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

3) chain A
residue 92
type
sequence S
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

4) chain A
residue 94
type
sequence S
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

5) chain A
residue 96
type
sequence V
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

6) chain A
residue 109
type
sequence A
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

7) chain A
residue 111
type
sequence K
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

8) chain A
residue 160
type
sequence S
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

9) chain A
residue 162
type
sequence A
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

10) chain A
residue 166
type
sequence E
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

11) chain A
residue 212
type
sequence L
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

12) chain A
residue 223
type
sequence D
description BINDING SITE FOR RESIDUE ATP A 500
source : AC1

13) chain A
residue 76
type
sequence K
description BINDING SITE FOR RESIDUE MJF A 600
source : AC2

14) chain A
residue 127
type
sequence V
description BINDING SITE FOR RESIDUE MJF A 600
source : AC2

15) chain A
residue 128
type
sequence T
description BINDING SITE FOR RESIDUE MJF A 600
source : AC2

16) chain A
residue 131
type
sequence R
description BINDING SITE FOR RESIDUE MJF A 600
source : AC2

17) chain A
residue 148
type
sequence T
description BINDING SITE FOR RESIDUE MJF A 600
source : AC2

18) chain A
residue 149
type
sequence F
description BINDING SITE FOR RESIDUE MJF A 600
source : AC2

19) chain A
residue 150
type
sequence Q
description BINDING SITE FOR RESIDUE MJF A 600
source : AC2

20) chain A
residue 155
type
sequence L
description BINDING SITE FOR RESIDUE MJF A 600
source : AC2

21) chain A
residue 156
type
sequence Y
description BINDING SITE FOR RESIDUE MJF A 600
source : AC2

22) chain A
residue 104
type
sequence T
description BINDING SITE FOR RESIDUE DMS A 700
source : AC3

23) chain A
residue 105
type
sequence S
description BINDING SITE FOR RESIDUE DMS A 700
source : AC3

24) chain A
residue 139
type
sequence H
description BINDING SITE FOR RESIDUE DMS A 700
source : AC3

25) chain A
residue 191
type
sequence S
description BINDING SITE FOR RESIDUE DMS A 700
source : AC3

26) chain A
residue 347
type
sequence W
description BINDING SITE FOR RESIDUE DMS A 700
source : AC3

27) chain A
residue 348
type
sequence E
description BINDING SITE FOR RESIDUE DMS A 700
source : AC3

28) chain A
residue 349
type
sequence N
description BINDING SITE FOR RESIDUE DMS A 700
source : AC3

29) chain A
residue 350
type
sequence L
description BINDING SITE FOR RESIDUE DMS A 700
source : AC3

30) chain A
residue 351
type
sequence H
description BINDING SITE FOR RESIDUE DMS A 700
source : AC3

31) chain A
residue 111
type
sequence K
description BINDING SITE FOR RESIDUE MG A 800
source : AC4

32) chain A
residue 223
type
sequence D
description BINDING SITE FOR RESIDUE MG A 800
source : AC4

33) chain A
residue 210
type
sequence N
description BINDING SITE FOR RESIDUE MG A 850
source : AC5

34) chain A
residue 223
type
sequence D
description BINDING SITE FOR RESIDUE MG A 850
source : AC5

35) chain A
residue 242
type
sequence F
description BINDING SITE FOR RESIDUE DTD A 900
source : AC6

36) chain A
residue 243
type
sequence V
description BINDING SITE FOR RESIDUE DTD A 900
source : AC6

37) chain A
residue 244
type
sequence G
description BINDING SITE FOR RESIDUE DTD A 900
source : AC6

38) chain A
residue 246
type
sequence A
description BINDING SITE FOR RESIDUE DTD A 900
source : AC6

39) chain A
residue 249
type
sequence V
description BINDING SITE FOR RESIDUE DTD A 900
source : AC6

40) chain A
residue 283
type
sequence R
description BINDING SITE FOR RESIDUE DTD A 900
source : AC6

41) chain A
residue 287
type
sequence E
description BINDING SITE FOR RESIDUE DTD A 900
source : AC6

42) chain A
residue 241
type MOD_RES
sequence X
description Phosphoserine; by autocatalysis => ECO:0000269|PubMed:10455013, ECO:0000269|PubMed:11481331, ECO:0000269|PubMed:15772071, ECO:0000269|PubMed:16780920, ECO:0000269|Ref.8
source Swiss-Prot : SWS_FT_FI4

43) chain A
residue 304
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:Q9Z2A0
source Swiss-Prot : SWS_FT_FI5

44) chain A
residue 354
type MOD_RES
sequence T
description Phosphothreonine; by MELK => ECO:0000269|PubMed:22544756
source Swiss-Prot : SWS_FT_FI6

45) chain A
residue 88-111
type prosite
sequence LGEGSFSTVVLARELATSREYAIK
description PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGEGSFSTVVlArelatsre..........YAIK
source prosite : PS00107

46) chain A
residue 201-213
type prosite
sequence IIHRDLKPENILL
description PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. IiHrDLKpeNILL
source prosite : PS00108

47) chain A
residue 205
type ACT_SITE
sequence D
description Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000255|PROSITE-ProRule:PRU10027
source Swiss-Prot : SWS_FT_FI1

48) chain A
residue 92
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

49) chain A
residue 111
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

50) chain A
residue 160
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

51) chain A
residue 166
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

52) chain A
residue 223
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

53) chain A
residue 209
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI3


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