eF-site ID 4aa6-ABEF
PDB Code 4aa6
Chain A, B, E, F

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Title The oestrogen receptor recognizes an imperfectly palindromic response element through an alternative side-chain conformation
Classification TRANSCRIPTION/DNA
Compound ESTROGEN RECEPTOR
Source (4AA6)
Sequence A:  TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIHNDYMCPA
TNQCTIDKNRRKSCQACRLRKCYEVGMMK
B:  TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHDYMCP
ATNQCTIDKNRRKSCQACRLRKCYEVGMMK
E:  RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGDYMCPAT
NQCTIDKNRRKSCQACRLRKCYEVGMMK
F:  TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMC
PATNQCTIDKRKSCQACRLRKCYEVGMMK
Description


Functional site

1) chain A
residue 185
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 253
source : AC1

2) chain A
residue 188
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 253
source : AC1

3) chain A
residue 202
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 253
source : AC1

4) chain A
residue 205
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 253
source : AC1

5) chain A
residue 221
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 254
source : AC2

6) chain A
residue 227
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 254
source : AC2

7) chain A
residue 237
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 254
source : AC2

8) chain A
residue 240
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 254
source : AC2

9) chain B
residue 185
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 253
source : AC3

10) chain B
residue 188
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 253
source : AC3

11) chain B
residue 202
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 253
source : AC3

12) chain B
residue 205
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 253
source : AC3

13) chain B
residue 221
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 254
source : AC4

14) chain B
residue 227
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 254
source : AC4

15) chain B
residue 237
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 254
source : AC4

16) chain B
residue 240
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 254
source : AC4

17) chain E
residue 185
type
sequence C
description BINDING SITE FOR RESIDUE ZN E 253
source : AC5

18) chain E
residue 188
type
sequence C
description BINDING SITE FOR RESIDUE ZN E 253
source : AC5

19) chain E
residue 202
type
sequence C
description BINDING SITE FOR RESIDUE ZN E 253
source : AC5

20) chain E
residue 205
type
sequence C
description BINDING SITE FOR RESIDUE ZN E 253
source : AC5

21) chain E
residue 221
type
sequence C
description BINDING SITE FOR RESIDUE ZN E 254
source : AC6

22) chain E
residue 227
type
sequence C
description BINDING SITE FOR RESIDUE ZN E 254
source : AC6

23) chain E
residue 237
type
sequence C
description BINDING SITE FOR RESIDUE ZN E 254
source : AC6

24) chain E
residue 240
type
sequence C
description BINDING SITE FOR RESIDUE ZN E 254
source : AC6

25) chain F
residue 185
type
sequence C
description BINDING SITE FOR RESIDUE ZN F 253
source : AC7

26) chain F
residue 188
type
sequence C
description BINDING SITE FOR RESIDUE ZN F 253
source : AC7

27) chain F
residue 202
type
sequence C
description BINDING SITE FOR RESIDUE ZN F 253
source : AC7

28) chain F
residue 205
type
sequence C
description BINDING SITE FOR RESIDUE ZN F 253
source : AC7

29) chain F
residue 221
type
sequence C
description BINDING SITE FOR RESIDUE ZN F 254
source : AC8

30) chain F
residue 227
type
sequence C
description BINDING SITE FOR RESIDUE ZN F 254
source : AC8

31) chain F
residue 237
type
sequence C
description BINDING SITE FOR RESIDUE ZN F 254
source : AC8

32) chain F
residue 240
type
sequence C
description BINDING SITE FOR RESIDUE ZN F 254
source : AC8

33) chain A
residue 185-211
type prosite
sequence CAVCNDYASGYHYGVWSCEGCKAFFKR
description NUCLEAR_REC_DBD_1 Nuclear hormones receptors DNA-binding region signature. CavCn.Dyasgy.HYgvwsCegCkaFFkR
source prosite : PS00031

34) chain A
residue 185-250
type DNA_BIND
sequence CAVCNDYASGYHYGVWSCEGCKAFFKRSIHNDYMCPATNQ
CTIDKNRRKSCQACRLRKCYEVGM
description Nuclear receptor => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI1

35) chain B
residue 185-250
type DNA_BIND
sequence CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHDYMCPATN
QCTIDKNRRKSCQACRLRKCYEVGM
description Nuclear receptor => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI1

36) chain E
residue 185-250
type DNA_BIND
sequence CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGDYMCPATNQ
CTIDKNRRKSCQACRLRKCYEVGM
description Nuclear receptor => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI1

37) chain F
residue 185-250
type DNA_BIND
sequence CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPAT
NQCTIDKRKSCQACRLRKCYEVGM
description Nuclear receptor => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI1

38) chain A
residue 185-205
type ZN_FING
sequence CAVCNDYASGYHYGVWSCEGC
description NR C4-type => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI2

39) chain A
residue 221-245
type ZN_FING
sequence CPATNQCTIDKNRRKSCQACRLRKC
description NR C4-type => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI2

40) chain B
residue 185-205
type ZN_FING
sequence CAVCNDYASGYHYGVWSCEGC
description NR C4-type => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI2

41) chain B
residue 221-245
type ZN_FING
sequence CPATNQCTIDKNRRKSCQACRLRKC
description NR C4-type => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI2

42) chain E
residue 185-205
type ZN_FING
sequence CAVCNDYASGYHYGVWSCEGC
description NR C4-type => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI2

43) chain E
residue 221-245
type ZN_FING
sequence CPATNQCTIDKNRRKSCQACRLRKC
description NR C4-type => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI2

44) chain F
residue 185-205
type ZN_FING
sequence CAVCNDYASGYHYGVWSCEGC
description NR C4-type => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI2

45) chain F
residue 221-245
type ZN_FING
sequence CPATNQCTIDKRKSCQACRLRKC
description NR C4-type => ECO:0000255|PROSITE-ProRule:PRU00407
source Swiss-Prot : SWS_FT_FI2


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