eF-site ID 4a3f-C
PDB Code 4a3f
Chain C

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Title RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP
Classification TRANSCRIPTION
Compound DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
Source ORGANISM_COMMON: BAKER'S YEAST; ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
Sequence C:  EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIP
TLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEY
SRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVS
NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKG
IAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWP
QSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQ
VVVRGIDTLQKKVASILLALTQMDQD
Description


Functional site
1) chain C
residue 86
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 1269
source : AC6
2) chain C
residue 88
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 1269
source : AC6
3) chain C
residue 92
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 1269
source : AC6
4) chain C
residue 95
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 1269
source : AC6
5) chain C
residue 31-71
type prosite
sequence NSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLI
P
description RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRvmiaeiptlAidsVevetNtTvlaDEfIAhRLGLIP
source prosite : PS00446

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