eF-site ID 4a3e-A
PDB Code 4a3e
Chain A

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Title RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP
Classification TRANSCRIPTION
Compound DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
Source ORGANISM_COMMON: BAKER'S YEAST; ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
Sequence A:  GQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMD
ETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFG
HIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELM
RQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLV
SRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVL
STEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVP
PPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHN
GAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPV
KSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELD
QVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGA
KYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPV
LFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADF
DGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMG
IVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPT
PAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKD
NGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVC
AKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITET
IAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFL
NEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMS
ACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVEN
SYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV
KALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQS
LDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGD
LKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRR
IIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRG
KNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAF
DWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLK
KVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAK
LIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQL
HFSLQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKN
DLFVIWSEDNDEKLIIRCRVVAEEDHMLKKIENTMLENIT
LRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVN
LSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEV
YNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRS
NTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQ
MAPIGTGAFDVMIDEESLVKYMP
Description (1)  DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 (E.C.2.7.7.6), DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 (E.C.2.7.7.6), DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2, RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4


Functional site

1) chain A
residue 107
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 2456
source : AC1

2) chain A
residue 110
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 2456
source : AC1

3) chain A
residue 148
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 2456
source : AC1

4) chain A
residue 167
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 2456
source : AC1

5) chain A
residue 67
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 2457
source : AC2

6) chain A
residue 69
type
sequence T
description BINDING SITE FOR RESIDUE ZN A 2457
source : AC2

7) chain A
residue 70
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 2457
source : AC2

8) chain A
residue 77
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 2457
source : AC2

9) chain A
residue 80
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 2457
source : AC2

10) chain A
residue 481
type
sequence D
description BINDING SITE FOR RESIDUE MG A 2458
source : AC3

11) chain A
residue 483
type
sequence D
description BINDING SITE FOR RESIDUE MG A 2458
source : AC3

12) chain A
residue 485
type
sequence D
description BINDING SITE FOR RESIDUE MG A 2458
source : AC3

13) chain A
residue 446
type
sequence R
description BINDING SITE FOR RESIDUE APC P 1011
source : BC1

14) chain A
residue 448
type
sequence P
description BINDING SITE FOR RESIDUE APC P 1011
source : BC1

15) chain A
residue 479
type
sequence N
description BINDING SITE FOR RESIDUE APC P 1011
source : BC1

16) chain A
residue 483
type catalytic
sequence D
description 788
source MCSA : MCSA1

17) chain A
residue 485
type catalytic
sequence D
description 788
source MCSA : MCSA1

18) chain A
residue 483
type ZN_FING
sequence D
description C4-type
source Swiss-Prot : SWS_FT_FI1

19) chain A
residue 485
type ZN_FING
sequence D
description C4-type
source Swiss-Prot : SWS_FT_FI1

20) chain A
residue 107
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

21) chain A
residue 110
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

22) chain A
residue 148
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

23) chain A
residue 167
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

24) chain A
residue 481
type ZN_FING
sequence D
description C4-type
source Swiss-Prot : SWS_FT_FI1


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