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eF-site ID
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4a3e-B |
PDB Code
|
4a3e |
Chain
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B |
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click to enlarge
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Title
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RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP |
Classification
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TRANSCRIPTION |
Compound
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DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 |
Source
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ORGANISM_COMMON: BAKER'S YEAST; ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; |
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Sequence
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B: |
DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTL
QDIICEDSTLIISFGKIYVTKPMVNESDGVTHALYPQEAR
LRNLTYSSGLFVDVKKKVFIGRLPIMLRSKNCYLSEATES
DLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFK
KAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR
TIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVND
WQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEK
RIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLL
CALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKD
IFRYMQRTVELAINAKTITSGLKYALATGNWGEQKKAMSS
RAGVSQVLNRYTYSSTLSHLRRTNTPIAKPRQLHNTHWGL
VCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW
GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLR
TLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVE
DDESLGHKELKVRKGHIAKLMATEYQDEYTWSSLLNEGLV
EYIDAEEEESILIAMQPEDLEPAEADVDPAKRIRVSHHAT
TFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQ
AMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRE
LPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFF
RSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDD
GLIAPGVRVSGEDVIIGKTTPISSKRDASTPLRSTENGIV
DQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGT
IGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIEC
LLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGF
EVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARG
PMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKE
RLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKI
DIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF
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Description
|
(1) |
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 (E.C.2.7.7.6), DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 (E.C.2.7.7.6), DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2, RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4
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Functional site
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1)
|
chain |
B |
residue |
1163 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2225
|
source |
: AC4
|
|
2)
|
chain |
B |
residue |
1166 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2225
|
source |
: AC4
|
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3)
|
chain |
B |
residue |
1182 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2225
|
source |
: AC4
|
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4)
|
chain |
B |
residue |
1185 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2225
|
source |
: AC4
|
|
5)
|
chain |
B |
residue |
766 |
type |
|
sequence |
R
|
description |
BINDING SITE FOR RESIDUE APC P 1011
|
source |
: BC1
|
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6)
|
chain |
B |
residue |
1020 |
type |
|
sequence |
R
|
description |
BINDING SITE FOR RESIDUE APC P 1011
|
source |
: BC1
|
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7)
|
chain |
B |
residue |
977-989 |
type |
prosite |
sequence |
GDKFASRHGQKGT
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
|
source |
prosite : PS01166
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8)
|
chain |
B |
residue |
837 |
type |
catalytic |
sequence |
D
|
description |
788
|
source |
MCSA : MCSA1
|
|
9)
|
chain |
B |
residue |
1185 |
type |
BINDING |
sequence |
C
|
description |
|
source |
Swiss-Prot : SWS_FT_FI2
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