eF-site ID 3ze3-D
PDB Code 3ze3
Chain D

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Title Crystal structure of the integral membrane diacylglycerol kinase - delta7
Classification TRANSFERASE
Compound DIACYLGLYCEROL KINASE
Source (KDGL_ECOLI)
Sequence D:  AGYSWKGLRAAWINEAAFRQEGVAVLLCVVIAAWLDVDAV
TRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYHELSGRA
KDLGSAAVLIAIIDAVITWAILLWSHFG
Description


Functional site

1) chain D
residue 64
type
sequence L
description BINDING SITE FOR RESIDUE NA F 1122
source : AC1

2) chain D
residue 107
type
sequence D
description BINDING SITE FOR RESIDUE NA F 1122
source : AC1

3) chain D
residue 60
type
sequence S
description BINDING SITE FOR RESIDUE NA E 1122
source : AC2

4) chain D
residue 28
type
sequence E
description BINDING SITE FOR RESIDUE ZN D 1122
source : AC3

5) chain D
residue 76
type
sequence E
description BINDING SITE FOR RESIDUE ZN D 1122
source : AC3

6) chain D
residue 76
type
sequence E
description BINDING SITE FOR RESIDUE FLC D 1123
source : AC4

7) chain D
residue 28
type
sequence E
description BINDING SITE FOR RESIDUE ACT D 1124
source : AC5

8) chain D
residue 69
type
sequence E
description BINDING SITE FOR RESIDUE ACT D 1124
source : AC5

9) chain D
residue 72
type
sequence N
description BINDING SITE FOR RESIDUE ACT D 1124
source : AC5

10) chain D
residue 73
type
sequence S
description BINDING SITE FOR RESIDUE ACT D 1124
source : AC5

11) chain D
residue 76
type
sequence E
description BINDING SITE FOR RESIDUE ACT D 1124
source : AC5

12) chain D
residue 25
type
sequence W
description BINDING SITE FOR RESIDUE 78M D 1125
source : AC8

13) chain D
residue 29
type
sequence A
description BINDING SITE FOR RESIDUE 78M D 1125
source : AC8

14) chain D
residue 32
type
sequence R
description BINDING SITE FOR RESIDUE 78M D 1125
source : AC8

15) chain D
residue 33
type
sequence Q
description BINDING SITE FOR RESIDUE 78M D 1125
source : AC8

16) chain D
residue 36
type
sequence V
description BINDING SITE FOR RESIDUE 78M D 1125
source : AC8

17) chain D
residue 33
type
sequence Q
description BINDING SITE FOR RESIDUE 78N C 1122
source : AC9

18) chain D
residue 22
type
sequence R
description BINDING SITE FOR RESIDUE 78M D 1126
source : BC2

19) chain D
residue 25
type
sequence W
description BINDING SITE FOR RESIDUE 78M D 1126
source : BC2

20) chain D
residue 102
type
sequence L
description BINDING SITE FOR RESIDUE 78M D 1127
source : BC3

21) chain D
residue 109
type
sequence V
description BINDING SITE FOR RESIDUE 78M D 1127
source : BC3

22) chain D
residue 113
type
sequence A
description BINDING SITE FOR RESIDUE 78M D 1127
source : BC3

23) chain D
residue 47
type
sequence W
description BINDING SITE FOR RESIDUE 78M D 1128
source : BC5

24) chain D
residue 48
type
sequence L
description BINDING SITE FOR RESIDUE 78M D 1128
source : BC5

25) chain D
residue 49
type
sequence D
description BINDING SITE FOR RESIDUE 78M D 1128
source : BC5

26) chain D
residue 120
type
sequence F
description BINDING SITE FOR RESIDUE 78M D 1128
source : BC5

27) chain D
residue 46
type
sequence A
description BINDING SITE FOR RESIDUE 78M A 1125
source : BC8

28) chain D
residue 47
type
sequence W
description BINDING SITE FOR RESIDUE 78M A 1125
source : BC8

29) chain D
residue 55
type
sequence R
description BINDING SITE FOR RESIDUE 78M A 1125
source : BC8

30) chain D
residue 39
type
sequence L
description BINDING SITE FOR RESIDUE 78M A 1126
source : BC9

31) chain D
residue 16
type BINDING
sequence Y
description BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI10

32) chain D
residue 28
type BINDING
sequence E
description BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI10

33) chain D
residue 76
type BINDING
sequence E
description BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI10

34) chain D
residue 85
type BINDING
sequence E
description BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI10

35) chain D
residue 94
type BINDING
sequence K
description BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI10

36) chain D
residue 22
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26960129
source Swiss-Prot : SWS_FT_FI11

37) chain D
residue 30
type BINDING
sequence A
description BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129
source Swiss-Prot : SWS_FT_FI12

38) chain D
residue 47
type BINDING
sequence W
description BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.25
source Swiss-Prot : SWS_FT_FI13

39) chain D
residue 55
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.25
source Swiss-Prot : SWS_FT_FI14

40) chain D
residue 31-47
type TRANSMEM
sequence FRQEGVAVLLCVVIAAW
description Helical => ECO:0000305|PubMed:12379131, ECO:0000305|PubMed:8071224
source Swiss-Prot : SWS_FT_FI2

41) chain D
residue 51-68
type TRANSMEM
sequence DAVTRVLLISSVMLVMIV
description Helical => ECO:0000305|PubMed:12379131, ECO:0000305|PubMed:8071224
source Swiss-Prot : SWS_FT_FI2

42) chain D
residue 48-50
type TOPO_DOM
sequence LDV
description Periplasmic => ECO:0000305|PubMed:12379131, ECO:0000305|PubMed:8071224
source Swiss-Prot : SWS_FT_FI3

43) chain D
residue 69-94
type TOPO_DOM
sequence ELLNSAIEAVVDRIGSEYHELSGRAK
description Cytoplasmic => ECO:0000305|PubMed:8071224
source Swiss-Prot : SWS_FT_FI4

44) chain D
residue 95-118
type TRANSMEM
sequence DLGSAAVLIAIIDAVITWAILLWS
description Helical => ECO:0000305|PubMed:8071224
source Swiss-Prot : SWS_FT_FI5

45) chain D
residue 119-121
type TOPO_DOM
sequence HFG
description Periplasmic => ECO:0000269|PubMed:15919996, ECO:0000269|PubMed:8071224
source Swiss-Prot : SWS_FT_FI6

46) chain D
residue 69
type ACT_SITE
sequence E
description Proton acceptor => ECO:0000305|PubMed:26673816
source Swiss-Prot : SWS_FT_FI7

47) chain D
residue 69
type BINDING
sequence E
description BINDING => ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI15

48) chain D
residue 98
type BINDING
sequence S
description BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129
source Swiss-Prot : SWS_FT_FI16

49) chain D
residue 112
type BINDING
sequence W
description BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI17


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