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eF-site ID
|
3vm6-C |
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PDB Code
|
3vm6 |
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Chain
|
C |
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click to enlarge
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Title
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Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 in complex with alpha-D-ribose-1,5-bisphosphate |
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Classification
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ISOMERASE |
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Compound
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Translation initiation factor eIF-2B, delta subunit |
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Source
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(Q5JFM9_PYRKO) |
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Sequence
|
C: |
AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSK
ATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGK
IAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAK
RIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRP
KWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGA
DSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHP
ETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDV
TPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWE
D
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Description
|
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Functional site
|
|
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1)
|
chain |
C |
| residue |
20 |
| type |
BINDING |
| sequence |
R
|
| description |
BINDING => ECO:0000255|HAMAP-Rule:MF_02230
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
2)
|
chain |
C |
| residue |
135 |
| type |
BINDING |
| sequence |
S
|
| description |
BINDING => ECO:0000255|HAMAP-Rule:MF_02230
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
3)
|
chain |
C |
| residue |
212 |
| type |
BINDING |
| sequence |
N
|
| description |
BINDING => ECO:0000255|HAMAP-Rule:MF_02230
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
4)
|
chain |
C |
| residue |
63 |
| type |
BINDING |
| sequence |
R
|
| description |
BINDING => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
|
5)
|
chain |
C |
| residue |
238 |
| type |
BINDING |
| sequence |
K
|
| description |
BINDING => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
|
6)
|
chain |
C |
| residue |
133 |
| type |
ACT_SITE |
| sequence |
S
|
| description |
Proton acceptor => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
7)
|
chain |
C |
| residue |
202 |
| type |
ACT_SITE |
| sequence |
D
|
| description |
Proton donor => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
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8)
|
chain |
C |
| residue |
227 |
| type |
SITE |
| sequence |
R
|
| description |
Plays a key role in hexamerization
|
| source |
Swiss-Prot : SWS_FT_FI5
|
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