|
eF-site ID
|
3vm6-B |
PDB Code
|
3vm6 |
Chain
|
B |
|
click to enlarge
|
|
Title
|
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 in complex with alpha-D-ribose-1,5-bisphosphate |
Classification
|
ISOMERASE |
Compound
|
Translation initiation factor eIF-2B, delta subunit |
Source
|
(Q5JFM9_PYRKO) |
|
Sequence
|
B: |
AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSK
ATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGK
IAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAK
RIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRP
KWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGA
DSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHP
ETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDV
TPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWE
D
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
B |
residue |
20 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000255|HAMAP-Rule:MF_02230
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
2)
|
chain |
B |
residue |
135 |
type |
BINDING |
sequence |
S
|
description |
BINDING => ECO:0000255|HAMAP-Rule:MF_02230
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
3)
|
chain |
B |
residue |
212 |
type |
BINDING |
sequence |
N
|
description |
BINDING => ECO:0000255|HAMAP-Rule:MF_02230
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
4)
|
chain |
B |
residue |
63 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
5)
|
chain |
B |
residue |
238 |
type |
BINDING |
sequence |
K
|
description |
BINDING => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
6)
|
chain |
B |
residue |
133 |
type |
ACT_SITE |
sequence |
S
|
description |
Proton acceptor => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
7)
|
chain |
B |
residue |
202 |
type |
ACT_SITE |
sequence |
D
|
description |
Proton donor => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
8)
|
chain |
B |
residue |
227 |
type |
SITE |
sequence |
R
|
description |
Plays a key role in hexamerization
|
source |
Swiss-Prot : SWS_FT_FI5
|
|
|
|