eF-site ID 3vdz-B PDB Code 3vdz Chain B click to enlarge Title Tailoring Encodable Lanthanide-Binding Tags as MRI Contrast Agents: xq-dSE3-Ubiquitin at 2.4 Angstroms Classification METAL BINDING PROTEIN, DE NOVO DESIGN Compound Ubiquitin-40S ribosomal protein S27a Source (3VDZ) Sequence B:  GAGYIDTDNDGSIDGDELYIDTDNDGSIDGDELLAMQIFV KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF AGKQLEDGRTLSDYNIQKESTLHLVLRLRG Description Functional site 1) chain B residue 71 type sequence D description BINDING SITE FOR RESIDUE GD B 201 source : AC5 2) chain B residue 73 type sequence D description BINDING SITE FOR RESIDUE GD B 201 source : AC5 3) chain B residue 75 type sequence D description BINDING SITE FOR RESIDUE GD B 201 source : AC5 4) chain B residue 77 type sequence S description BINDING SITE FOR RESIDUE GD B 201 source : AC5 5) chain B residue 79 type sequence D description BINDING SITE FOR RESIDUE GD B 201 source : AC5 6) chain B residue 82 type sequence E description BINDING SITE FOR RESIDUE GD B 201 source : AC5 7) chain B residue 86 type sequence D description BINDING SITE FOR RESIDUE GD B 202 source : AC6 8) chain B residue 88 type sequence D description BINDING SITE FOR RESIDUE GD B 202 source : AC6 9) chain B residue 90 type sequence D description BINDING SITE FOR RESIDUE GD B 202 source : AC6 10) chain B residue 92 type sequence S description BINDING SITE FOR RESIDUE GD B 202 source : AC6 11) chain B residue 97 type sequence E description BINDING SITE FOR RESIDUE GD B 202 source : AC6 12) chain B residue 127 type sequence K description BINDING SITE FOR RESIDUE SO4 B 203 source : AC7 13) chain B residue 141 type sequence Q description BINDING SITE FOR RESIDUE SO4 B 203 source : AC7 14) chain B residue 142 type sequence R description BINDING SITE FOR RESIDUE SO4 B 203 source : AC7 15) chain B residue 152 type sequence D description BINDING SITE FOR RESIDUE SO4 B 203 source : AC7 16) chain B residue 172 type sequence R description BINDING SITE FOR RESIDUE SO4 B 203 source : AC7 17) chain B residue 91 type sequence G description BINDING SITE FOR RESIDUE SO4 B 204 source : AC8 18) chain B residue 172 type sequence R description BINDING SITE FOR RESIDUE SO4 B 204 source : AC8 19) chain B residue 174 type sequence R description BINDING SITE FOR RESIDUE SO4 B 204 source : AC8 20) chain B residue 175 type sequence G description BINDING SITE FOR RESIDUE SO4 B 204 source : AC8 21) chain B residue 163 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:18719106 source Swiss-Prot : SWS_FT_FI12 22) chain B residue 166 type MOD_RES sequence T description (Microbial infection) ADP-ribosylthreonine => ECO:0000269|PubMed:32330457 source Swiss-Prot : SWS_FT_FI4 23) chain B residue 106 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603 source Swiss-Prot : SWS_FT_FI6 24) chain B residue 154 type SITE sequence R description Interacts with activating enzyme source Swiss-Prot : SWS_FT_FI1 25) chain B residue 172 type SITE sequence R description Interacts with activating enzyme source Swiss-Prot : SWS_FT_FI1 26) chain B residue 168 type SITE sequence H description Essential for function source Swiss-Prot : SWS_FT_FI2 27) chain B residue 165 type MOD_RES sequence S description Phosphoserine; by PINK1 => ECO:0000269|PubMed:24660806, ECO:0000269|PubMed:24751536, ECO:0000269|PubMed:24784582, ECO:0000269|PubMed:25474007, ECO:0000269|PubMed:25527291 source Swiss-Prot : SWS_FT_FI3 28) chain B residue 133 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25752577 source Swiss-Prot : SWS_FT_FI11 29) chain B residue 127 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860 source Swiss-Prot : SWS_FT_FI9 30) chain B residue 129 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:25752573, ECO:0000269|PubMed:25752577, ECO:0000269|PubMed:34239127 source Swiss-Prot : SWS_FT_FI10 31) chain B residue 111 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144 source Swiss-Prot : SWS_FT_FI8 32) chain B residue 148 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144 source Swiss-Prot : SWS_FT_FI8

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