eF-site ID 3swc-ABPQ
PDB Code 3swc
Chain A, B, P, Q

click to enlarge
Title GLP (G9a-like protein) SET domain in complex with Dnmt3aK44me2 peptide
Classification TRANSFERASE
Compound Histone-lysine N-methyltransferase EHMT1
Source Homo sapiens (Human) (DNM3A_MOUSE)
Sequence A:  VERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNC
VTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYD
KDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLR
ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEA
DVREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEP
NLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGER
FWDIKGKLFSCRCGSPKCRHS
B:  VERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNC
VTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYD
KDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLR
ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEA
DVREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEP
NLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGER
FWDIKGKLFSCRCGSPKCRHS
P:  TARXVGRPG
Q:  ARXVGRPG
Description


Functional site

1) chain A
residue 1031
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 301
source : AC1

2) chain A
residue 1044
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 301
source : AC1

3) chain A
residue 1074
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 301
source : AC1

4) chain A
residue 1078
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 301
source : AC1

5) chain A
residue 1037
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 302
source : AC2

6) chain A
residue 1074
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 302
source : AC2

7) chain A
residue 1080
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 302
source : AC2

8) chain A
residue 1084
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 302
source : AC2

9) chain A
residue 1031
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 303
source : AC3

10) chain A
residue 1033
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 303
source : AC3

11) chain A
residue 1037
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 303
source : AC3

12) chain A
residue 1042
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 303
source : AC3

13) chain A
residue 1172
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 304
source : AC4

14) chain A
residue 1225
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 304
source : AC4

15) chain A
residue 1227
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 304
source : AC4

16) chain A
residue 1232
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 304
source : AC4

17) chain A
residue 1105
type
sequence M
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

18) chain A
residue 1107
type
sequence W
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

19) chain A
residue 1141
type
sequence S
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

20) chain A
residue 1142
type
sequence Y
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

21) chain A
residue 1166
type
sequence R
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

22) chain A
residue 1169
type
sequence N
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

23) chain A
residue 1170
type
sequence H
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

24) chain A
residue 1211
type
sequence Y
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

25) chain A
residue 1223
type
sequence F
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

26) chain A
residue 1224
type
sequence S
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

27) chain A
residue 1225
type
sequence C
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

28) chain A
residue 1226
type
sequence R
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

29) chain P
residue 47
type
sequence R
description BINDING SITE FOR RESIDUE SAH A 202
source : AC5

30) chain B
residue 1031
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 305
source : AC6

31) chain B
residue 1044
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 305
source : AC6

32) chain B
residue 1074
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 305
source : AC6

33) chain B
residue 1078
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 305
source : AC6

34) chain B
residue 1037
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 306
source : AC7

35) chain B
residue 1074
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 306
source : AC7

36) chain B
residue 1080
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 306
source : AC7

37) chain B
residue 1084
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 306
source : AC7

38) chain B
residue 1031
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 307
source : AC8

39) chain B
residue 1033
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 307
source : AC8

40) chain B
residue 1037
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 307
source : AC8

41) chain B
residue 1042
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 307
source : AC8

42) chain B
residue 1172
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 308
source : AC9

43) chain B
residue 1225
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 308
source : AC9

44) chain B
residue 1227
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 308
source : AC9

45) chain B
residue 1232
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 308
source : AC9

46) chain B
residue 1105
type
sequence M
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

47) chain B
residue 1106
type
sequence G
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

48) chain B
residue 1107
type
sequence W
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

49) chain B
residue 1141
type
sequence S
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

50) chain B
residue 1142
type
sequence Y
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

51) chain B
residue 1166
type
sequence R
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

52) chain B
residue 1167
type
sequence F
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

53) chain B
residue 1169
type
sequence N
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

54) chain B
residue 1170
type
sequence H
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

55) chain B
residue 1211
type
sequence Y
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

56) chain B
residue 1215
type
sequence F
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

57) chain B
residue 1223
type
sequence F
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

58) chain B
residue 1225
type
sequence C
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

59) chain B
residue 1226
type
sequence R
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

60) chain Q
residue 47
type
sequence R
description BINDING SITE FOR RESIDUE SAH B 201
source : BC1

61) chain A
residue 1031
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

62) chain A
residue 1105
type BINDING
sequence M
description
source Swiss-Prot : SWS_FT_FI1

63) chain A
residue 1142
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI1

64) chain A
residue 1169
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI1

65) chain A
residue 1172
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

66) chain A
residue 1225
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

67) chain A
residue 1226
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI1

68) chain A
residue 1227
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

69) chain A
residue 1232
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

70) chain B
residue 1031
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

71) chain B
residue 1033
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

72) chain A
residue 1033
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

73) chain B
residue 1037
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

74) chain B
residue 1042
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

75) chain B
residue 1044
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

76) chain B
residue 1074
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

77) chain B
residue 1078
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

78) chain B
residue 1080
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

79) chain B
residue 1084
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

80) chain B
residue 1105
type BINDING
sequence M
description
source Swiss-Prot : SWS_FT_FI1

81) chain B
residue 1142
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI1

82) chain B
residue 1169
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI1

83) chain A
residue 1037
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

84) chain B
residue 1172
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

85) chain B
residue 1225
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

86) chain B
residue 1226
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI1

87) chain B
residue 1227
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

88) chain B
residue 1232
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

89) chain A
residue 1042
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

90) chain A
residue 1044
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

91) chain A
residue 1074
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

92) chain A
residue 1078
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

93) chain A
residue 1080
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

94) chain A
residue 1084
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

95) chain A
residue 1124
type SITE
sequence Y
description Histone H3K9me binding => ECO:0000269|PubMed:18264113, ECO:0000269|PubMed:20084102
source Swiss-Prot : SWS_FT_FI2

96) chain B
residue 1124
type SITE
sequence Y
description Histone H3K9me binding => ECO:0000269|PubMed:18264113, ECO:0000269|PubMed:20084102
source Swiss-Prot : SWS_FT_FI2

97) chain A
residue 1017
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI3

98) chain B
residue 1017
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI3


Display surface

Download
Links