eF-site ID 3rwp-A
PDB Code 3rwp
Chain A

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Title Discovery of a Novel, Potent and Selective Inhibitor of 3-Phosphoinositide Dependent Kinase (PDK1)
Classification TRANSFERASE/TRANSFERASE INHIBITOR
Compound 3-phosphoinositide-dependent protein kinase 1
Source null (PDPK1_HUMAN)
Sequence A:  QPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKI
LEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD
EKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSA
LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSX
FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPP
FRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDA
TKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT
Description (1)  3-phosphoinositide-dependent protein kinase 1 (E.C.2.7.11.1)


Functional site

1) chain A
residue 106
type
sequence R
description BINDING SITE FOR RESIDUE GOL A 901
source : AC1

2) chain A
residue 107
type
sequence E
description BINDING SITE FOR RESIDUE GOL A 901
source : AC1

3) chain A
residue 160
type
sequence S
description BINDING SITE FOR RESIDUE GOL A 901
source : AC1

4) chain A
residue 161
type
sequence Y
description BINDING SITE FOR RESIDUE GOL A 901
source : AC1

5) chain A
residue 103
type
sequence A
description BINDING SITE FOR RESIDUE GOL A 902
source : AC2

6) chain A
residue 104
type
sequence T
description BINDING SITE FOR RESIDUE GOL A 902
source : AC2

7) chain A
residue 139
type
sequence H
description BINDING SITE FOR RESIDUE GOL A 902
source : AC2

8) chain A
residue 191
type
sequence S
description BINDING SITE FOR RESIDUE GOL A 902
source : AC2

9) chain A
residue 347
type
sequence W
description BINDING SITE FOR RESIDUE GOL A 902
source : AC2

10) chain A
residue 348
type
sequence E
description BINDING SITE FOR RESIDUE GOL A 902
source : AC2

11) chain A
residue 349
type
sequence N
description BINDING SITE FOR RESIDUE GOL A 902
source : AC2

12) chain A
residue 350
type
sequence L
description BINDING SITE FOR RESIDUE GOL A 902
source : AC2

13) chain A
residue 351
type
sequence H
description BINDING SITE FOR RESIDUE GOL A 902
source : AC2

14) chain A
residue 79
type
sequence P
description BINDING SITE FOR RESIDUE GOL A 903
source : AC3

15) chain A
residue 84
type
sequence F
description BINDING SITE FOR RESIDUE GOL A 903
source : AC3

16) chain A
residue 154
type
sequence K
description BINDING SITE FOR RESIDUE GOL A 903
source : AC3

17) chain A
residue 156
type
sequence Y
description BINDING SITE FOR RESIDUE GOL A 903
source : AC3

18) chain A
residue 328
type
sequence E
description BINDING SITE FOR RESIDUE GOL A 903
source : AC3

19) chain A
residue 331
type
sequence E
description BINDING SITE FOR RESIDUE GOL A 903
source : AC3

20) chain A
residue 332
type
sequence G
description BINDING SITE FOR RESIDUE GOL A 903
source : AC3

21) chain A
residue 106
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A 904
source : AC4

22) chain A
residue 351
type
sequence H
description BINDING SITE FOR RESIDUE SO4 A 904
source : AC4

23) chain A
residue 76
type
sequence K
description BINDING SITE FOR RESIDUE SO4 A 905
source : AC5

24) chain A
residue 131
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A 905
source : AC5

25) chain A
residue 148
type
sequence T
description BINDING SITE FOR RESIDUE SO4 A 905
source : AC5

26) chain A
residue 149
type
sequence F
description BINDING SITE FOR RESIDUE SO4 A 905
source : AC5

27) chain A
residue 150
type
sequence Q
description BINDING SITE FOR RESIDUE SO4 A 905
source : AC5

28) chain A
residue 144
type
sequence K
description BINDING SITE FOR RESIDUE SO4 A 906
source : AC6

29) chain A
residue 144
type
sequence K
description BINDING SITE FOR RESIDUE SO4 A 906
source : AC6

30) chain A
residue 146
type
sequence Y
description BINDING SITE FOR RESIDUE SO4 A 906
source : AC6

31) chain A
residue 146
type
sequence Y
description BINDING SITE FOR RESIDUE SO4 A 906
source : AC6

32) chain A
residue 146
type
sequence Y
description BINDING SITE FOR RESIDUE SO4 A 907
source : AC7

33) chain A
residue 160
type
sequence S
description BINDING SITE FOR RESIDUE SO4 A 907
source : AC7

34) chain A
residue 220
type
sequence Q
description BINDING SITE FOR RESIDUE SO4 A 907
source : AC7

35) chain A
residue 106
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A 908
source : AC8

36) chain A
residue 107
type
sequence E
description BINDING SITE FOR RESIDUE SO4 A 908
source : AC8

37) chain A
residue 351
type
sequence H
description BINDING SITE FOR RESIDUE SO4 A 908
source : AC8

38) chain A
residue 352
type
sequence Q
description BINDING SITE FOR RESIDUE SO4 A 908
source : AC8

39) chain A
residue 73
type
sequence Q
description BINDING SITE FOR RESIDUE SO4 A 909
source : AC9

40) chain A
residue 75
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A 909
source : AC9

41) chain A
residue 136
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A 909
source : AC9

42) chain A
residue 199
type
sequence K
description BINDING SITE FOR RESIDUE SO4 A 909
source : AC9

43) chain A
residue 91
type
sequence G
description BINDING SITE FOR RESIDUE GOL A 910
source : BC1

44) chain A
residue 92
type
sequence S
description BINDING SITE FOR RESIDUE GOL A 910
source : BC1

45) chain A
residue 93
type
sequence F
description BINDING SITE FOR RESIDUE GOL A 910
source : BC1

46) chain A
residue 88
type
sequence L
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

47) chain A
residue 89
type
sequence G
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

48) chain A
residue 90
type
sequence E
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

49) chain A
residue 91
type
sequence G
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

50) chain A
residue 94
type
sequence S
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

51) chain A
residue 95
type
sequence T
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

52) chain A
residue 96
type
sequence V
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

53) chain A
residue 109
type
sequence A
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

54) chain A
residue 111
type
sequence K
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

55) chain A
residue 159
type
sequence L
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

56) chain A
residue 160
type
sequence S
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

57) chain A
residue 162
type
sequence A
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

58) chain A
residue 166
type
sequence E
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

59) chain A
residue 209
type
sequence E
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

60) chain A
residue 212
type
sequence L
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

61) chain A
residue 222
type
sequence T
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

62) chain A
residue 223
type
sequence D
description BINDING SITE FOR RESIDUE ABQ A 360
source : BC2

63) chain A
residue 205
type ACT_SITE
sequence D
description Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000255|PROSITE-ProRule:PRU10027
source Swiss-Prot : SWS_FT_FI1

64) chain A
residue 111
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

65) chain A
residue 160
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

66) chain A
residue 166
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

67) chain A
residue 223
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

68) chain A
residue 92
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

69) chain A
residue 209
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI3

70) chain A
residue 241
type MOD_RES
sequence X
description Phosphoserine; by autocatalysis => ECO:0000269|PubMed:10455013, ECO:0000269|PubMed:11481331, ECO:0000269|PubMed:15772071, ECO:0000269|PubMed:16780920, ECO:0000269|Ref.8
source Swiss-Prot : SWS_FT_FI4

71) chain A
residue 304
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:Q9Z2A0
source Swiss-Prot : SWS_FT_FI5

72) chain A
residue 354
type MOD_RES
sequence T
description Phosphothreonine; by MELK => ECO:0000269|PubMed:22544756
source Swiss-Prot : SWS_FT_FI6

73) chain A
residue 88-111
type prosite
sequence LGEGSFSTVVLARELATSREYAIK
description PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGEGSFSTVVlArelatsre..........YAIK
source prosite : PS00107

74) chain A
residue 201-213
type prosite
sequence IIHRDLKPENILL
description PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. IiHrDLKpeNILL
source prosite : PS00108


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