eF-site ID 3rv2-AB
PDB Code 3rv2
Chain A, B

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Title Crystal structure of S-adenosylmethionine synthetase from Mycobacterium marinum
Classification TRANSFERASE
Compound S-adenosylmethionine synthase
Source Mycobacterium marinum (strain ATCC BAA-535 / M) (METK_MYCMM)
Sequence A:  GRLFTSESVTEGHPDKICDAVSDSVLDALLAADPRSRVAV
ETLVTTGQVHVVGEVTTTAKEAFADITNIVRERILDIGYD
SSDKGFDGASCGVNIGIGAQSPGDQGLMFGYAINDTPELM
PLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIAYED
RVPVRLDTVVISTQHADDIDLVKTLDPDIREQVLKTVLDD
LAHDTLDASAVRVLVNPTGKFVLGGPMGDAGLTGRKIIVD
TYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAG
LAERVEVQVAYAIGKAAPVGLFVETFGSEAVDPVKIEKAI
GEVFDLRPGAIIRDLNLLRPIYAPTAAYGHFGRTDVDLPW
ERLDKVDDLKRAI
B:  GRLFTSESVTEGHPDKICDAVSDSVLDALLAADPRSRVAV
ETLVTTGQVHVVGEVTTTAKEAFADITNIVRERILDIGYD
SSDKGFDGASCGVNIGIGAQSPGDQGLMFGYAINDTPELM
PLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIAYED
RVPVRLDTVVISTQHADDIDLVKTLDPDIREQVLKTVLDD
LAHDTLDASAVRVLVNPTGKFVLGGPMGDAGLTGRKIIVD
TYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAG
LAERVEVQVAYAIGKAAPVGLFVETFGSEAVDPVKIEKAI
GEVFDLRPGAIIRDLNLLRPIYAPTAAYGHFGRTDVDLPW
ERLDKVDDLKRAI
Description


Functional site

1) chain A
residue 259
type
sequence D
description BINDING SITE FOR RESIDUE CA A 404
source : AC1

2) chain A
residue 394
type
sequence D
description BINDING SITE FOR RESIDUE CA A 405
source : AC2

3) chain A
residue 397
type
sequence D
description BINDING SITE FOR RESIDUE CA A 405
source : AC2

4) chain A
residue 398
type
sequence D
description BINDING SITE FOR RESIDUE CA A 405
source : AC2

5) chain A
residue 158
type
sequence H
description BINDING SITE FOR RESIDUE EDO A 406
source : AC3

6) chain A
residue 162
type
sequence R
description BINDING SITE FOR RESIDUE EDO A 406
source : AC3

7) chain A
residue 382
type
sequence G
description BINDING SITE FOR RESIDUE EDO A 406
source : AC3

8) chain A
residue 383
type
sequence R
description BINDING SITE FOR RESIDUE EDO A 406
source : AC3

9) chain A
residue 384
type
sequence T
description BINDING SITE FOR RESIDUE EDO A 406
source : AC3

10) chain A
residue 385
type
sequence D
description BINDING SITE FOR RESIDUE EDO A 406
source : AC3

11) chain A
residue 41
type
sequence R
description BINDING SITE FOR RESIDUE GOL A 407
source : AC4

12) chain A
residue 43
type
sequence A
description BINDING SITE FOR RESIDUE GOL A 407
source : AC4

13) chain A
residue 58
type
sequence E
description BINDING SITE FOR RESIDUE GOL A 407
source : AC4

14) chain A
residue 59
type
sequence V
description BINDING SITE FOR RESIDUE GOL A 407
source : AC4

15) chain A
residue 60
type
sequence T
description BINDING SITE FOR RESIDUE GOL A 407
source : AC4

16) chain A
residue 290
type
sequence K
description BINDING SITE FOR RESIDUE GOL A 407
source : AC4

17) chain B
residue 259
type
sequence D
description BINDING SITE FOR RESIDUE CA B 404
source : AC5

18) chain B
residue 158
type
sequence H
description BINDING SITE FOR RESIDUE EDO B 405
source : AC6

19) chain B
residue 162
type
sequence R
description BINDING SITE FOR RESIDUE EDO B 405
source : AC6

20) chain B
residue 382
type
sequence G
description BINDING SITE FOR RESIDUE EDO B 405
source : AC6

21) chain B
residue 383
type
sequence R
description BINDING SITE FOR RESIDUE EDO B 405
source : AC6

22) chain B
residue 384
type
sequence T
description BINDING SITE FOR RESIDUE EDO B 405
source : AC6

23) chain B
residue 385
type
sequence D
description BINDING SITE FOR RESIDUE EDO B 405
source : AC6

24) chain A
residue 363
type
sequence R
description BINDING SITE FOR RESIDUE EDO B 406
source : AC7

25) chain A
residue 364
type
sequence D
description BINDING SITE FOR RESIDUE EDO B 406
source : AC7

26) chain B
residue 364
type
sequence D
description BINDING SITE FOR RESIDUE EDO B 406
source : AC7

27) chain B
residue 394
type
sequence D
description BINDING SITE FOR RESIDUE EDO B 406
source : AC7

28) chain B
residue 395
type
sequence K
description BINDING SITE FOR RESIDUE EDO B 406
source : AC7

29) chain A
residue 364
type
sequence D
description BINDING SITE FOR RESIDUE EDO B 407
source : AC8

30) chain A
residue 394
type
sequence D
description BINDING SITE FOR RESIDUE EDO B 407
source : AC8

31) chain A
residue 395
type
sequence K
description BINDING SITE FOR RESIDUE EDO B 407
source : AC8

32) chain B
residue 363
type
sequence R
description BINDING SITE FOR RESIDUE EDO B 407
source : AC8

33) chain B
residue 364
type
sequence D
description BINDING SITE FOR RESIDUE EDO B 407
source : AC8

34) chain B
residue 41
type
sequence R
description BINDING SITE FOR RESIDUE GOL B 408
source : AC9

35) chain B
residue 42
type
sequence V
description BINDING SITE FOR RESIDUE GOL B 408
source : AC9

36) chain B
residue 43
type
sequence A
description BINDING SITE FOR RESIDUE GOL B 408
source : AC9

37) chain B
residue 58
type
sequence E
description BINDING SITE FOR RESIDUE GOL B 408
source : AC9

38) chain B
residue 59
type
sequence V
description BINDING SITE FOR RESIDUE GOL B 408
source : AC9

39) chain B
residue 60
type
sequence T
description BINDING SITE FOR RESIDUE GOL B 408
source : AC9

40) chain B
residue 290
type
sequence K
description BINDING SITE FOR RESIDUE GOL B 408
source : AC9

41) chain A
residue 279-287
type prosite
sequence GGGAFSGKD
description ADOMET_SYNTHASE_2 S-adenosylmethionine synthase signature 2. GGGAFSgKD
source prosite : PS00377

42) chain A
residue 17
type BINDING
sequence H
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

43) chain B
residue 104
type BINDING
sequence Q
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

44) chain B
residue 179
type BINDING
sequence D
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

45) chain B
residue 250
type BINDING
sequence K
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

46) chain B
residue 265
type BINDING
sequence R
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

47) chain B
residue 290
type BINDING
sequence K
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

48) chain A
residue 58
type BINDING
sequence E
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

49) chain A
residue 104
type BINDING
sequence Q
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

50) chain A
residue 179
type BINDING
sequence D
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

51) chain A
residue 250
type BINDING
sequence K
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

52) chain A
residue 265
type BINDING
sequence R
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

53) chain A
residue 290
type BINDING
sequence K
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

54) chain B
residue 17
type BINDING
sequence H
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

55) chain B
residue 58
type BINDING
sequence E
description in other chain => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI1

56) chain A
residue 19
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI2

57) chain B
residue 286
type BINDING
sequence K
description BINDING => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI2

58) chain A
residue 45
type BINDING
sequence E
description BINDING => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI2

59) chain A
residue 259
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI2

60) chain A
residue 282
type BINDING
sequence A
description BINDING => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI2

61) chain A
residue 286
type BINDING
sequence K
description BINDING => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI2

62) chain B
residue 19
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI2

63) chain B
residue 45
type BINDING
sequence E
description BINDING => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI2

64) chain B
residue 259
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI2

65) chain B
residue 282
type BINDING
sequence A
description BINDING => ECO:0000255|HAMAP-Rule:MF_00086
source Swiss-Prot : SWS_FT_FI2


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