|
eF-site ID
|
3r2a-ABCDEF |
PDB Code
|
3r2a |
Chain
|
A, B, C, D, E, F |
|
click to enlarge
|
|
Title
|
Crystal structure of RXRalpha ligand-binding domain complexed with corepressor SMRT2 and antagonist rhein |
Classification
|
TRANSCRIPTION |
Compound
|
Retinoic acid receptor RXR-alpha |
Source
|
Homo sapiens (Human) (NCOR2_HUMAN) |
|
Sequence
|
A: |
ANEDMPVERILEAELAVEPKDPVTNICQAADKQLFTLVEW
AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKD
GILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQM
DKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA
YCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI
GDTPIDTFLME
|
B: |
NEDMPVERILEAELAVENDPVTNICQAADKQLFTLVEWAK
RIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI
LLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDK
TELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYC
KHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD
TPIDTFLMEMLEAPHQM
|
C: |
EDMPVERILEAELAVEPICQAADKQLFTLVEWAKRIPHFS
ELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGL
HVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCL
RAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE
QPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTF
LME
|
D: |
NEDMPVERILEAELAVEPKTEPVTNICQAADKQLFTLVEW
AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKD
GILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQM
DKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA
YCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI
GDTPIDTFLMEMLEAPHQM
|
E: |
NMGLEAI
|
F: |
TNMGLEAII
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
A |
residue |
268 |
type |
|
sequence |
I
|
description |
BINDING SITE FOR RESIDUE RHN A 1
|
source |
: AC1
|
|
2)
|
chain |
A |
residue |
306 |
type |
|
sequence |
N
|
description |
BINDING SITE FOR RESIDUE RHN A 1
|
source |
: AC1
|
|
3)
|
chain |
A |
residue |
313 |
type |
|
sequence |
F
|
description |
BINDING SITE FOR RESIDUE RHN A 1
|
source |
: AC1
|
|
4)
|
chain |
A |
residue |
324 |
type |
|
sequence |
I
|
description |
BINDING SITE FOR RESIDUE RHN A 1
|
source |
: AC1
|
|
5)
|
chain |
A |
residue |
432 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE RHN A 1
|
source |
: AC1
|
|
6)
|
chain |
A |
residue |
436 |
type |
|
sequence |
L
|
description |
BINDING SITE FOR RESIDUE RHN A 1
|
source |
: AC1
|
|
7)
|
chain |
B |
residue |
447 |
type |
|
sequence |
I
|
description |
BINDING SITE FOR RESIDUE RHN C 2
|
source |
: AC2
|
|
8)
|
chain |
C |
residue |
306 |
type |
|
sequence |
N
|
description |
BINDING SITE FOR RESIDUE RHN C 2
|
source |
: AC2
|
|
9)
|
chain |
C |
residue |
309 |
type |
|
sequence |
L
|
description |
BINDING SITE FOR RESIDUE RHN C 2
|
source |
: AC2
|
|
10)
|
chain |
C |
residue |
345 |
type |
|
sequence |
I
|
description |
BINDING SITE FOR RESIDUE RHN C 2
|
source |
: AC2
|
|
11)
|
chain |
C |
residue |
432 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE RHN C 2
|
source |
: AC2
|
|
12)
|
chain |
C |
residue |
436 |
type |
|
sequence |
L
|
description |
BINDING SITE FOR RESIDUE RHN C 2
|
source |
: AC2
|
|
13)
|
chain |
A |
residue |
316 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
14)
|
chain |
A |
residue |
327 |
type |
BINDING |
sequence |
A
|
description |
BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
15)
|
chain |
B |
residue |
316 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
16)
|
chain |
B |
residue |
327 |
type |
BINDING |
sequence |
A
|
description |
BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
17)
|
chain |
C |
residue |
316 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
18)
|
chain |
C |
residue |
327 |
type |
BINDING |
sequence |
A
|
description |
BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
19)
|
chain |
D |
residue |
316 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
20)
|
chain |
D |
residue |
327 |
type |
BINDING |
sequence |
A
|
description |
BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
|
|