eF-site ID 3r2a-ABCDEF
PDB Code 3r2a
Chain A, B, C, D, E, F

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Title Crystal structure of RXRalpha ligand-binding domain complexed with corepressor SMRT2 and antagonist rhein
Classification TRANSCRIPTION
Compound Retinoic acid receptor RXR-alpha
Source Homo sapiens (Human) (NCOR2_HUMAN)
Sequence A:  ANEDMPVERILEAELAVEPKDPVTNICQAADKQLFTLVEW
AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKD
GILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQM
DKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA
YCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI
GDTPIDTFLME
B:  NEDMPVERILEAELAVENDPVTNICQAADKQLFTLVEWAK
RIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI
LLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDK
TELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYC
KHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD
TPIDTFLMEMLEAPHQM
C:  EDMPVERILEAELAVEPICQAADKQLFTLVEWAKRIPHFS
ELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGL
HVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCL
RAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE
QPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTF
LME
D:  NEDMPVERILEAELAVEPKTEPVTNICQAADKQLFTLVEW
AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKD
GILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQM
DKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA
YCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI
GDTPIDTFLMEMLEAPHQM
E:  NMGLEAI
F:  TNMGLEAII
Description


Functional site

1) chain A
residue 268
type
sequence I
description BINDING SITE FOR RESIDUE RHN A 1
source : AC1

2) chain A
residue 306
type
sequence N
description BINDING SITE FOR RESIDUE RHN A 1
source : AC1

3) chain A
residue 313
type
sequence F
description BINDING SITE FOR RESIDUE RHN A 1
source : AC1

4) chain A
residue 324
type
sequence I
description BINDING SITE FOR RESIDUE RHN A 1
source : AC1

5) chain A
residue 432
type
sequence C
description BINDING SITE FOR RESIDUE RHN A 1
source : AC1

6) chain A
residue 436
type
sequence L
description BINDING SITE FOR RESIDUE RHN A 1
source : AC1

7) chain B
residue 447
type
sequence I
description BINDING SITE FOR RESIDUE RHN C 2
source : AC2

8) chain C
residue 306
type
sequence N
description BINDING SITE FOR RESIDUE RHN C 2
source : AC2

9) chain C
residue 309
type
sequence L
description BINDING SITE FOR RESIDUE RHN C 2
source : AC2

10) chain C
residue 345
type
sequence I
description BINDING SITE FOR RESIDUE RHN C 2
source : AC2

11) chain C
residue 432
type
sequence C
description BINDING SITE FOR RESIDUE RHN C 2
source : AC2

12) chain C
residue 436
type
sequence L
description BINDING SITE FOR RESIDUE RHN C 2
source : AC2

13) chain A
residue 316
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
source Swiss-Prot : SWS_FT_FI1

14) chain A
residue 327
type BINDING
sequence A
description BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
source Swiss-Prot : SWS_FT_FI1

15) chain B
residue 316
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
source Swiss-Prot : SWS_FT_FI1

16) chain B
residue 327
type BINDING
sequence A
description BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
source Swiss-Prot : SWS_FT_FI1

17) chain C
residue 316
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
source Swiss-Prot : SWS_FT_FI1

18) chain C
residue 327
type BINDING
sequence A
description BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
source Swiss-Prot : SWS_FT_FI1

19) chain D
residue 316
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
source Swiss-Prot : SWS_FT_FI1

20) chain D
residue 327
type BINDING
sequence A
description BINDING => ECO:0000269|PubMed:16107141, ECO:0000269|PubMed:18800767, ECO:0000269|PubMed:19167885, ECO:0007744|PDB:2ACL, ECO:0007744|PDB:3FAL, ECO:0007744|PDB:3FC6
source Swiss-Prot : SWS_FT_FI1


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