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eF-site ID
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3qq3-ABCDEF |
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PDB Code
|
3qq3 |
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Chain
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A, B, C, D, E, F |
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click to enlarge
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Title
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Crystal structure of swine major histocompatibility complex class I SLA-1 0401 and identification of 2009 pandemic swine-origin influenza A H1N1 virus cytotoxic T lymphocyte epitope peptides |
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Classification
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IMMUNE SYSTEM |
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Compound
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MHC class I antigen |
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Source
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Sus scrofa (Pig) (Q9WDF0_9INFA) |
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Sequence
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A: |
GPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYA
PNPRMEPRVPWIQQEGQEYWDRETRNVKETAQTYGVGLNT
LRGYYNQSEAGSHTLQSMYGCYLGPDGLLLHGYRQDAYDG
ADYIALNEDLRSWTAADMAAQITKRKWEAADEAERRRSYL
QGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVT
LRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT
FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD
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| B: |
FVARPPKVQVYSRHPAENGKPNYLNCYVSGFHPPQIEIDL
LKNGEKMNAEQSDLSFSKDWSFYLLVHTEFTPNAVDQYSC
RVKHVTLDKPKIVKWDRDH
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| C: |
NSDTVGWSW
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| D: |
GPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYA
PNPRMEPRVPWIQQEGQEYWDRETRNVKETAQTYGVGLNT
LRGYYNQSEAGSHTLQSMYGCYLGPDGLLLHGYRQDAYDG
ADYIALNEDLRSWTAADMAAQITKRKWEAADEAERRRSYL
QGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVT
LRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT
FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD
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| E: |
FVARPPKVQVYSRHPAENGKPNYLNCYVSGFHPPQIEIDL
LKNGEKMNAEQSDLSFSKDWSFYLLVHTEFTPNAVDQYSC
RVKHVTLDKPKIVKWDRDH
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| F: |
NSDTVGWSW
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Description
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(1) |
MHC class I antigen, Beta-2-microglobulin, 9-mer peptide from Neuraminidase
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Functional site
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|
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1)
|
chain |
B |
| residue |
79-85 |
| type |
prosite |
| sequence |
YSCRVKH
|
| description |
IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YSCRVKH
|
| source |
prosite : PS00290
|
|
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2)
|
chain |
A |
| residue |
257-263 |
| type |
prosite |
| sequence |
YTCHVQH
|
| description |
IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YSCRVKH
|
| source |
prosite : PS00290
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