eF-site ID 3q23-B
PDB Code 3q23
Chain B

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Title X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II
Classification TRANSFERASE/DNA
Compound Virion RNA polymerase
Source (3Q23)
Sequence B:  TEELKEGIDAVYPSLVGTADSKAEGIKNYFKLSFTLPEEQ
KSRTVGSEAPLKDVAQALSSRARYELFTEKETANPAFNGE
VIKRYKELMEHGEGIADILRSRLAKFLNTKDVGKRFAQGT
EANRWVGGKLLNIVEQDGDTFKYNEQLLQTAVLAGLQWRL
TATSNTAIKDAKDVAAITGIDQALLPEGLVEQFDTGMTLT
EAVSSLAQKIESYWGLSRNPNAPLGYTKGIPTAMAAEILA
AFVESTDVVENIVDMSEIDPDNKKTIGLYTITELDSFDPI
NSFPTAIEEAVLVNPTEKMFFGDDIPPVANTQLRNPAVRN
TPEQKAALKAEQATEFYVHTPMVQFYETLGKDRILELMGA
GTLNKELLNDNHAKSLEGKNRSVEDSYNQLFSVIEQVRAQ
SEDISTVPIHYAYNMTRVGRMQMLGKYNPQSAKLVREAIL
PTKATLDLSNQNNEDFSAFQLGLAQALDIKVHTMTREVMS
DELTKLLEGNLKPAIDMMVEFNTTGSLPENAVDVLNTALG
DRKSFVALMALMEYSRYLVAEDKSAFVTPLYVEADGVTNG
PINAMMLMTGGLFTPDWIRNIAKGGLFIGSPNKTMNEHRS
TADNNDLYQASTNALMESLGKLRSNYASNMPIQSQIDSLL
SLMDLFLPDINLGENGALELKRGIAKNPLTITIYGSGARG
IAGKLVSSVTDAIYERMSDVLKARAKDPNISAAMAMFGKQ
AASEAHAEELLARFLKDMETLTSTVPVKRKGVLELQSTGT
GAKGKINPKTYTIKGEQLKALQENMLHFFVEPLRNGITQT
VGESLVYSTEQLQKATQIQSVVLEDMFKQRVQEKLAEKAK
DPTWKKGDFLTQKELNDIQASLNNLAPMIETGSQTFYIAG
SENAEVANQVLATNLDDRMRVPMSIYAPAQAGVAGIPFMT
IGTGDGMMMQTLSTMKGAPKNTLKIFDGMNIGLNDITDAS
RKANEAVYTSWQGNPIKNVYESYAKFMKNVDFSKLSPEAL
EAIGKSALEYDQRENATVDDIANAASLIERNLRNIALGVD
IRHKVLDKVNLSIDQMAAVGAPYQNNGKIDLSNMTPEQQA
DELNKLFREELEAR
Description


Functional site

1) chain B
residue 424
type
sequence R
description BINDING SITE FOR RESIDUE G2P B 1108
source : AC6

2) chain B
residue 437
type
sequence K
description BINDING SITE FOR RESIDUE G2P B 1108
source : AC6

3) chain B
residue 557
type
sequence E
description BINDING SITE FOR RESIDUE G2P B 1108
source : AC6

4) chain B
residue 559
type
sequence D
description BINDING SITE FOR RESIDUE G2P B 1108
source : AC6

5) chain B
residue 925
type
sequence I
description BINDING SITE FOR RESIDUE G2P B 1108
source : AC6

6) chain B
residue 950
type
sequence F
description BINDING SITE FOR RESIDUE G2P B 1108
source : AC6

7) chain B
residue 951
type
sequence D
description BINDING SITE FOR RESIDUE G2P B 1108
source : AC6

8) chain B
residue 424
type
sequence R
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

9) chain B
residue 559
type
sequence D
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

10) chain B
residue 560
type
sequence G
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

11) chain B
residue 561
type
sequence V
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

12) chain B
residue 562
type
sequence T
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

13) chain B
residue 563
type
sequence N
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

14) chain B
residue 564
type
sequence G
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

15) chain B
residue 565
type
sequence P
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

16) chain B
residue 612
type
sequence Y
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

17) chain B
residue 666
type
sequence R
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

18) chain B
residue 670
type
sequence K
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

19) chain B
residue 671
type
sequence N
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

20) chain B
residue 678
type
sequence Y
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

21) chain B
residue 951
type
sequence D
description BINDING SITE FOR RESIDUE G2P B 1109
source : AC7

22) chain B
residue 559
type
sequence D
description BINDING SITE FOR RESIDUE MN B 1107
source : AC8

23) chain B
residue 951
type
sequence D
description BINDING SITE FOR RESIDUE MN B 1107
source : AC8

24) chain B
residue 559
type
sequence D
description BINDING SITE FOR RESIDUE MN B 1110
source : AC9

25) chain B
residue 560
type
sequence G
description BINDING SITE FOR RESIDUE MN B 1110
source : AC9

26) chain B
residue 951
type
sequence D
description BINDING SITE FOR RESIDUE MN B 1110
source : AC9

27) chain B
residue 469
type
sequence Q
description BINDING SITE FOR RESIDUE 2HP B 1111
source : BC1

28) chain B
residue 473
type
sequence I
description BINDING SITE FOR RESIDUE 2HP B 1111
source : BC1

29) chain B
residue 474
type
sequence K
description BINDING SITE FOR RESIDUE 2HP B 1111
source : BC1

30) chain B
residue 475
type
sequence V
description BINDING SITE FOR RESIDUE 2HP B 1111
source : BC1

31) chain B
residue 476
type
sequence H
description BINDING SITE FOR RESIDUE 2HP B 1111
source : BC1

32) chain B
residue 437
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:21321236, ECO:0000269|PubMed:23235152
source Swiss-Prot : SWS_FT_FI1

33) chain B
residue 559
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:21321236, ECO:0000269|PubMed:23235152
source Swiss-Prot : SWS_FT_FI1

34) chain B
residue 670
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:21321236, ECO:0000269|PubMed:23235152
source Swiss-Prot : SWS_FT_FI1

35) chain B
residue 951
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:21321236, ECO:0000269|PubMed:23235152
source Swiss-Prot : SWS_FT_FI1


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