eF-site ID 3oym-B
PDB Code 3oym
Chain B

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Title Crystal structure of the PFV N224H mutant intasome bound to manganese
Classification RECOMBINATION,VIRAL PROTEIN/DNA
Compound PFV integrase
Source Human spumaretrovirus (SFVcpz(hu)) (Human foamy virus) (3OYM)
Sequence B:  DRPQKPFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGFTWL
YPTKAPSTSATVKSLNVLTSIAIPKVIHSDQGAAFTSSTF
AEWAKERGIHLEFSTPYHPQSSGKVERKHSDIKRLLTKLL
VGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSN
TPFANQDTLDLTREEELSLLQEIR
Description


Functional site

1) chain B
residue 128
type
sequence D
description BINDING SITE FOR RESIDUE MN B 393
source : AC8

2) chain B
residue 185
type
sequence D
description BINDING SITE FOR RESIDUE MN B 393
source : AC8

3) chain B
residue 263
type
sequence Y
description BINDING SITE FOR RESIDUE GOL B 803
source : AC9

4) chain B
residue 267
type
sequence Q
description BINDING SITE FOR RESIDUE GOL B 803
source : AC9

5) chain B
residue 271
type
sequence G
description BINDING SITE FOR RESIDUE GOL B 803
source : AC9

6) chain B
residue 273
type
sequence D
description BINDING SITE FOR RESIDUE GOL B 803
source : AC9

7) chain B
residue 221
type
sequence E
description BINDING SITE FOR RESIDUE MN B 394
source : BC1

8) chain B
residue 224
type
sequence H
description BINDING SITE FOR RESIDUE MN B 394
source : BC1

9) chain B
residue 285
type
sequence D
description BINDING SITE FOR RESIDUE MN B 394
source : BC1

10) chain B
residue 127
type
sequence I
description BINDING SITE FOR RESIDUE GOL B 395
source : BC2

11) chain B
residue 183
type
sequence H
description BINDING SITE FOR RESIDUE GOL B 395
source : BC2

12) chain B
residue 214
type
sequence P
description BINDING SITE FOR RESIDUE GOL B 395
source : BC2

13) chain B
residue 216
type
sequence S
description BINDING SITE FOR RESIDUE GOL B 395
source : BC2

14) chain B
residue 217
type
sequence S
description BINDING SITE FOR RESIDUE GOL B 395
source : BC2

15) chain B
residue 220
type
sequence V
description BINDING SITE FOR RESIDUE GOL B 395
source : BC2

16) chain B
residue 221
type
sequence E
description BINDING SITE FOR RESIDUE GOL B 395
source : BC2

17) chain B
residue 219
type
sequence K
description BINDING SITE FOR RESIDUE SO4 B 396
source : BC3

18) chain B
residue 222
type
sequence R
description BINDING SITE FOR RESIDUE SO4 B 396
source : BC3

19) chain B
residue 258
type
sequence S
description BINDING SITE FOR RESIDUE SO4 B 396
source : BC3

20) chain B
residue 259
type
sequence P
description BINDING SITE FOR RESIDUE SO4 B 396
source : BC3

21) chain B
residue 260
type
sequence V
description BINDING SITE FOR RESIDUE SO4 B 396
source : BC3

22) chain B
residue 133
type
sequence L
description BINDING SITE FOR RESIDUE HEZ B 397
source : BC4

23) chain B
residue 228
type
sequence K
description BINDING SITE FOR RESIDUE HEZ B 397
source : BC4

24) chain B
residue 232
type
sequence T
description BINDING SITE FOR RESIDUE HEZ B 397
source : BC4

25) chain B
residue 123
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

26) chain B
residue 185
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1


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