eF-site ID 3oju-A PDB Code 3oju Chain A click to enlarge Title Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing c5 modified thymidies Classification Transferase/DNA Compound DNA polymerase I, thermostable Source null (3OJU) Sequence A:  LEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVH RAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDP MLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLF ANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDV AYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERV LFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKIL QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGR LSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQ IELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA VDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFI ERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDL EARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLE EMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPL AVPLEVEVGIGEDWLSAKE Description Functional site 1) chain A residue 573 type sequence R description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 2) chain A residue 587 type sequence R description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 3) chain A residue 610 type sequence D description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 4) chain A residue 611 type sequence Y description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 5) chain A residue 612 type sequence S description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 6) chain A residue 613 type sequence Q description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 7) chain A residue 614 type sequence I description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 8) chain A residue 615 type sequence E description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 9) chain A residue 639 type sequence H description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 10) chain A residue 659 type sequence R description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 11) chain A residue 660 type sequence R description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 12) chain A residue 663 type sequence K description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 13) chain A residue 664 type sequence T description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 14) chain A residue 667 type sequence F description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 15) chain A residue 785 type sequence D description BINDING SITE FOR RESIDUE SSJ A 1 source : AC1 16) chain A residue 610 type sequence D description BINDING SITE FOR RESIDUE MG A 2 source : AC2 17) chain A residue 611 type sequence Y description BINDING SITE FOR RESIDUE MG A 2 source : AC2 18) chain A residue 785 type sequence D description BINDING SITE FOR RESIDUE MG A 2 source : AC2 19) chain A residue 610 type sequence D description BINDING SITE FOR RESIDUE MG A 3 source : AC3 20) chain A residue 785 type sequence D description BINDING SITE FOR RESIDUE MG A 3 source : AC3 21) chain A residue 354 type sequence K description BINDING SITE FOR RESIDUE GOL A 4 source : AC4 22) chain A residue 355 type sequence D description BINDING SITE FOR RESIDUE GOL A 4 source : AC4 23) chain A residue 565 type sequence N description BINDING SITE FOR RESIDUE GOL A 4 source : AC4 24) chain A residue 566 type sequence Q description BINDING SITE FOR RESIDUE GOL A 4 source : AC4 25) chain A residue 544 type sequence T description BINDING SITE FOR RESIDUE GOL A 5 source : AC5 26) chain A residue 579 type sequence P description BINDING SITE FOR RESIDUE GOL A 5 source : AC5 27) chain A residue 580 type sequence N description BINDING SITE FOR RESIDUE GOL A 5 source : AC5 28) chain A residue 583 type sequence N description BINDING SITE FOR RESIDUE GOL A 5 source : AC5 29) chain A residue 485 type sequence N description BINDING SITE FOR RESIDUE GOL A 6 source : AC6 30) chain A residue 347 type sequence E description BINDING SITE FOR RESIDUE PGE A 7 source : AC7 31) chain A residue 349 type sequence R description BINDING SITE FOR RESIDUE PGE A 7 source : AC7 32) chain A residue 370 type sequence G description BINDING SITE FOR RESIDUE PGE A 7 source : AC7 33) chain A residue 371 type sequence D description BINDING SITE FOR RESIDUE PGE A 7 source : AC7 34) chain A residue 745 type sequence E description BINDING SITE FOR RESIDUE PGE A 8 source : AC8 35) chain A residue 746 type sequence R description BINDING SITE FOR RESIDUE PGE A 8 source : AC8 36) chain A residue 485 type sequence N description BINDING SITE FOR RESIDUE GOL A 9 source : AC9 37) chain A residue 486 type sequence S description BINDING SITE FOR RESIDUE GOL A 9 source : AC9 38) chain A residue 487 type sequence R description BINDING SITE FOR RESIDUE GOL A 9 source : AC9 39) chain A residue 488 type sequence D description BINDING SITE FOR RESIDUE GOL A 9 source : AC9 40) chain A residue 767 type sequence K description BINDING SITE FOR RESIDUE PGE A 10 source : BC1 41) chain A residue 767 type sequence K description BINDING SITE FOR RESIDUE PGE A 10 source : BC1 42) chain A residue 771 type sequence R description BINDING SITE FOR RESIDUE PGE A 10 source : BC1 43) chain A residue 810 type sequence V description BINDING SITE FOR RESIDUE PGE A 10 source : BC1 44) chain A residue 371 type sequence D description BINDING SITE FOR RESIDUE PGE A 11 source : BC2 45) chain A residue 435 type sequence R description BINDING SITE FOR RESIDUE PGE A 11 source : BC2 46) chain A residue 313 type sequence R description BINDING SITE FOR RESIDUE PGE A 12 source : BC3 47) chain A residue 315 type sequence E description BINDING SITE FOR RESIDUE PGE A 12 source : BC3 48) chain A residue 318 type sequence W description BINDING SITE FOR RESIDUE PGE A 12 source : BC3 49) chain A residue 552 type sequence L description BINDING SITE FOR RESIDUE PGE A 12 source : BC3 50) chain A residue 396 type sequence G description BINDING SITE FOR RESIDUE PGE A 13 source : BC4 51) chain A residue 397 type sequence E description BINDING SITE FOR RESIDUE PGE A 13 source : BC4 52) chain A residue 404 type sequence E description BINDING SITE FOR RESIDUE PGE A 13 source : BC4 53) chain A residue 411 type sequence R description BINDING SITE FOR RESIDUE PGE A 13 source : BC4 54) chain A residue 460 type sequence S description BINDING SITE FOR RESIDUE PGE A 14 source : BC5 55) chain A residue 542 type sequence K description BINDING SITE FOR RESIDUE PGE A 14 source : BC5 56) chain A residue 425 type sequence R description BINDING SITE FOR RESIDUE GOL A 15 source : BC6 57) chain A residue 428 type sequence W description BINDING SITE FOR RESIDUE GOL A 15 source : BC6 58) chain A residue 724 type sequence F description BINDING SITE FOR RESIDUE GOL A 15 source : BC6 59) chain A residue 447 type sequence T description BINDING SITE FOR RESIDUE PGE A 16 source : BC7 60) chain A residue 778 type sequence R description BINDING SITE FOR RESIDUE PGE A 16 source : BC7 61) chain A residue 479 type sequence G description BINDING SITE FOR RESIDUE PGE A 17 source : BC8 62) chain A residue 508 type sequence K description BINDING SITE FOR RESIDUE PGE A 18 source : BC9 63) chain A residue 509 type sequence T description BINDING SITE FOR RESIDUE PGE A 18 source : BC9 64) chain A residue 734 type sequence E description BINDING SITE FOR RESIDUE PGE A 18 source : BC9 65) chain A residue 735 type sequence A description BINDING SITE FOR RESIDUE PGE A 18 source : BC9 66) chain A residue 728 type sequence R description BINDING SITE FOR RESIDUE GOL C 1 source : CC1 67) chain A residue 747 type sequence M description BINDING SITE FOR RESIDUE GOL C 1 source : CC1 68) chain A residue 659-678 type prosite sequence RRAAKTINFGVLYGMSAHRL description DNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL source prosite : PS00447

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