eF-site ID 3o0e-B
PDB Code 3o0e
Chain B

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Title Crystal structure of OmpF in complex with colicin peptide OBS1
Classification MEMBRANE PROTEIN
Compound Porin OmpF
Source ORGANISM_SCIENTIFIC: Escherichia coli;
Sequence B:  AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTY
ARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNK
TRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGG
DTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGK
NERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQ
EAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPI
TNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKA
KDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDS
DNKLGVGSDDTVAVGIVYQF
Description


Functional site

1) chain B
residue 98
type
sequence Y
description binding site for residue BOG B 401
source : AC1

2) chain B
residue 157
type
sequence Y
description binding site for residue BOG B 401
source : AC1

3) chain B
residue 160
type
sequence K
description binding site for residue BOG B 401
source : AC1

4) chain B
residue 172
type
sequence D
description binding site for residue BOG B 401
source : AC1

5) chain B
residue 21
type
sequence H
description binding site for residue BOG D 401
source : AC3

6) chain B
residue 23
type
sequence F
description binding site for residue BOG D 401
source : AC3

7) chain B
residue 334
type
sequence V
description binding site for residue BOG D 401
source : AC3

8) chain B
residue 1-6
type TRANSMEM
sequence AEIYNK
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

9) chain B
residue 8-23
type TRANSMEM
sequence GNKVDLYGKAVGLHYF
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

10) chain B
residue 39-51
type TRANSMEM
sequence TYARLGFKGETQI
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

11) chain B
residue 54-66
type TRANSMEM
sequence DLTGYGQWEYNFQ
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

12) chain B
residue 83-91
type TRANSMEM
sequence LAFAGLKYA
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

13) chain B
residue 94-100
type TRANSMEM
sequence GSFDYGR
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

14) chain B
residue 135-141
type TRANSMEM
sequence GVATYRN
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

15) chain B
residue 150-159
type TRANSMEM
sequence GLNFAVQYLG
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

16) chain B
residue 172-182
type TRANSMEM
sequence DGVGGSISYEY
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

17) chain B
residue 184-195
type TRANSMEM
sequence GFGIVGAYGAAD
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

18) chain B
residue 211-222
type TRANSMEM
sequence AEQWATGLKYDA
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

19) chain B
residue 224-235
type TRANSMEM
sequence NIYLAANYGETR
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

20) chain B
residue 253-265
type TRANSMEM
sequence KTQDVLLVAQYQF
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

21) chain B
residue 268-281
type TRANSMEM
sequence GLRPSIAYTKSKAK
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

22) chain B
residue 292-303
type TRANSMEM
sequence VNYFEVGATYYF
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

23) chain B
residue 306-315
type TRANSMEM
sequence NMSTYVDYII
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

24) chain B
residue 331-340
type TRANSMEM
sequence TVAVGIVYQF
description Beta stranded
source Swiss-Prot : SWS_FT_FI1

25) chain B
residue 52-53
type TOPO_DOM
sequence NS
description Periplasmic
source Swiss-Prot : SWS_FT_FI2

26) chain B
residue 92-93
type TOPO_DOM
sequence DV
description Periplasmic
source Swiss-Prot : SWS_FT_FI2

27) chain B
residue 142-149
type TOPO_DOM
sequence SNFFGLVD
description Periplasmic
source Swiss-Prot : SWS_FT_FI2

28) chain B
residue 183
type TOPO_DOM
sequence E
description Periplasmic
source Swiss-Prot : SWS_FT_FI2

29) chain B
residue 223
type TOPO_DOM
sequence N
description Periplasmic
source Swiss-Prot : SWS_FT_FI2

30) chain B
residue 266-267
type TOPO_DOM
sequence DF
description Periplasmic
source Swiss-Prot : SWS_FT_FI2

31) chain B
residue 304-305
type TOPO_DOM
sequence NK
description Periplasmic
source Swiss-Prot : SWS_FT_FI2

32) chain B
residue 7
type TOPO_DOM
sequence D
description Periplasmic
source Swiss-Prot : SWS_FT_FI2

33) chain B
residue 67-82
type TOPO_DOM
sequence GNNSEGADAQTGNKTR
description Extracellular
source Swiss-Prot : SWS_FT_FI3

34) chain B
residue 101-134
type TOPO_DOM
sequence NYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVG
description Extracellular
source Swiss-Prot : SWS_FT_FI3

35) chain B
residue 160-171
type TOPO_DOM
sequence KNERDTARRSNG
description Extracellular
source Swiss-Prot : SWS_FT_FI3

36) chain B
residue 196-210
type TOPO_DOM
sequence RTNLQEAQPLGNGKK
description Extracellular
source Swiss-Prot : SWS_FT_FI3

37) chain B
residue 236-252
type TOPO_DOM
sequence NATPITNKFTNTSGFAN
description Extracellular
source Swiss-Prot : SWS_FT_FI3

38) chain B
residue 282-291
type TOPO_DOM
sequence DVEGIGDVDL
description Extracellular
source Swiss-Prot : SWS_FT_FI3

39) chain B
residue 316-330
type TOPO_DOM
sequence NQIDSDNKLGVGSDD
description Extracellular
source Swiss-Prot : SWS_FT_FI3

40) chain B
residue 24-38
type TOPO_DOM
sequence SKGNGENSYGGNGDM
description Extracellular
source Swiss-Prot : SWS_FT_FI3


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