eF-site ID 3mx5-A
PDB Code 3mx5
Chain A

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Title Lassa fever virus nucleoprotein complexed with UTP
Classification NUCLEAR PROTEIN
Compound Nucleoprotein
Source Lassa virus (strain Mouse/Sierra Leone/Josiah/1976) (LASV) (NCAP_LASSJ)
Sequence A:  IKSFLWTQSLRRELSGYCSNIKLQVVKDAQALLHGLDFSE
VSNVQRLMRKERRDDNDLKRLRDLNQAVNNLVELKSTQQK
SILRVGTLTSDDLLILAADLEKLKSKVIRTERPLSAGVYM
GNLSSQQLDQRRALLNMIGMDGVVRVWDVKNAELLNNQFG
TMPSLTLACLTKQGQVDLNDAVQALTDLGLIYTAKYPNTS
DLDRLTQSHPILNMIDTKKSSLNISGYNFSLGAAVKAGAC
MLDGGNMLETIKVSPQTMDGILKSILKVKKALGMFISDTP
GERNPYENILYKICLSGDGWPYIASRTSITGRAWENTVVD
LEGLTYSQLMTLKDAMLQLDPNAKTWMDIEGRPEDPVEIA
LYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFAT
QPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKL
IDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKEEI
TPHCALMDCIMFDAAVSGGLNTSVLRAVLPRDMVFR
Description


Functional site

1) chain A
residue 117
type
sequence E
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

2) chain A
residue 120
type
sequence L
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

3) chain A
residue 172
type
sequence L
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

4) chain A
residue 176
type
sequence F
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

5) chain A
residue 177
type
sequence G
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

6) chain A
residue 178
type
sequence T
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

7) chain A
residue 238
type
sequence S
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

8) chain A
residue 239
type
sequence L
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

9) chain A
residue 240
type
sequence N
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

10) chain A
residue 241
type
sequence I
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

11) chain A
residue 253
type
sequence K
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

12) chain A
residue 300
type
sequence R
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

13) chain A
residue 309
type
sequence K
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

14) chain A
residue 323
type
sequence R
description BINDING SITE FOR RESIDUE UTP A 993
source : AC1

15) chain A
residue 399
type
sequence E
description BINDING SITE FOR RESIDUE ZN A 570
source : AC6

16) chain A
residue 506
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 570
source : AC6

17) chain A
residue 509
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 570
source : AC6

18) chain A
residue 529
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 570
source : AC6

19) chain A
residue 389
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_04085, ECO:0000269|PubMed:21085117, ECO:0000269|PubMed:21262835
source Swiss-Prot : SWS_FT_FI1

20) chain A
residue 391
type BINDING
sequence E
description BINDING => ECO:0000255|HAMAP-Rule:MF_04085, ECO:0000269|PubMed:21085117, ECO:0000269|PubMed:21262835
source Swiss-Prot : SWS_FT_FI1

21) chain A
residue 533
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_04085, ECO:0000269|PubMed:21085117, ECO:0000269|PubMed:21262835
source Swiss-Prot : SWS_FT_FI1

22) chain A
residue 399
type BINDING
sequence E
description BINDING => ECO:0000255|HAMAP-Rule:MF_04085, ECO:0000269|PubMed:21085117, ECO:0000269|PubMed:21262835, ECO:0000269|PubMed:22937163, ECO:0000269|PubMed:23615902
source Swiss-Prot : SWS_FT_FI2

23) chain A
residue 506
type BINDING
sequence C
description BINDING => ECO:0000255|HAMAP-Rule:MF_04085, ECO:0000269|PubMed:21085117, ECO:0000269|PubMed:21262835, ECO:0000269|PubMed:22937163, ECO:0000269|PubMed:23615902
source Swiss-Prot : SWS_FT_FI2

24) chain A
residue 509
type BINDING
sequence H
description BINDING => ECO:0000255|HAMAP-Rule:MF_04085, ECO:0000269|PubMed:21085117, ECO:0000269|PubMed:21262835, ECO:0000269|PubMed:22937163, ECO:0000269|PubMed:23615902
source Swiss-Prot : SWS_FT_FI2

25) chain A
residue 529
type BINDING
sequence C
description BINDING => ECO:0000255|HAMAP-Rule:MF_04085, ECO:0000269|PubMed:21085117, ECO:0000269|PubMed:21262835, ECO:0000269|PubMed:22937163, ECO:0000269|PubMed:23615902
source Swiss-Prot : SWS_FT_FI2

26) chain A
residue 466
type SITE
sequence D
description Important for exonuclease activity => ECO:0000255|HAMAP-Rule:MF_04085, ECO:0000269|PubMed:21085117
source Swiss-Prot : SWS_FT_FI3


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