eF-site ID 3msf-A
PDB Code 3msf
Chain A

click to enlarge
Title Crystal structure of Thermolysin in complex with Urea
Classification HYDROLASE
Compound Thermolysin
Source ORGANISM_SCIENTIFIC: Bacillus thermoproteolyticus;
Sequence A:  ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGNGIF
TYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVT
YDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSQM
VYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNE
SGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGD
SLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKA
AYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSN
FSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK
Description


Functional site

1) chain A
residue 142
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 401
source : AC1

2) chain A
residue 146
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 401
source : AC1

3) chain A
residue 166
type
sequence E
description BINDING SITE FOR RESIDUE ZN A 401
source : AC1

4) chain A
residue 138
type
sequence D
description BINDING SITE FOR RESIDUE CA A 501
source : AC2

5) chain A
residue 177
type
sequence E
description BINDING SITE FOR RESIDUE CA A 501
source : AC2

6) chain A
residue 185
type
sequence D
description BINDING SITE FOR RESIDUE CA A 501
source : AC2

7) chain A
residue 187
type
sequence E
description BINDING SITE FOR RESIDUE CA A 501
source : AC2

8) chain A
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE CA A 501
source : AC2

9) chain A
residue 177
type
sequence E
description BINDING SITE FOR RESIDUE CA A 502
source : AC3

10) chain A
residue 183
type
sequence N
description BINDING SITE FOR RESIDUE CA A 502
source : AC3

11) chain A
residue 185
type
sequence D
description BINDING SITE FOR RESIDUE CA A 502
source : AC3

12) chain A
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE CA A 502
source : AC3

13) chain A
residue 57
type
sequence D
description BINDING SITE FOR RESIDUE CA A 503
source : AC4

14) chain A
residue 59
type
sequence D
description BINDING SITE FOR RESIDUE CA A 503
source : AC4

15) chain A
residue 61
type
sequence Q
description BINDING SITE FOR RESIDUE CA A 503
source : AC4

16) chain A
residue 193
type
sequence Y
description BINDING SITE FOR RESIDUE CA A 504
source : AC5

17) chain A
residue 194
type
sequence T
description BINDING SITE FOR RESIDUE CA A 504
source : AC5

18) chain A
residue 197
type
sequence I
description BINDING SITE FOR RESIDUE CA A 504
source : AC5

19) chain A
residue 200
type
sequence D
description BINDING SITE FOR RESIDUE CA A 504
source : AC5

20) chain A
residue 112
type
sequence N
description BINDING SITE FOR RESIDUE URE A 601
source : AC6

21) chain A
residue 143
type
sequence E
description BINDING SITE FOR RESIDUE URE A 601
source : AC6

22) chain A
residue 203
type
sequence R
description BINDING SITE FOR RESIDUE URE A 601
source : AC6

23) chain A
residue 4
type
sequence T
description BINDING SITE FOR RESIDUE GOL A 801
source : AC7

24) chain A
residue 5
type
sequence S
description BINDING SITE FOR RESIDUE GOL A 801
source : AC7

25) chain A
residue 7
type
sequence V
description BINDING SITE FOR RESIDUE GOL A 801
source : AC7

26) chain A
residue 28
type
sequence Y
description BINDING SITE FOR RESIDUE GOL A 801
source : AC7

27) chain A
residue 60
type
sequence N
description BINDING SITE FOR RESIDUE GOL A 801
source : AC7

28) chain A
residue 248
type
sequence G
description BINDING SITE FOR RESIDUE GOL A 802
source : AC8

29) chain A
residue 254
type
sequence S
description BINDING SITE FOR RESIDUE GOL A 802
source : AC8

30) chain A
residue 255
type
sequence V
description BINDING SITE FOR RESIDUE GOL A 802
source : AC8

31) chain A
residue 256
type
sequence V
description BINDING SITE FOR RESIDUE GOL A 802
source : AC8

32) chain A
residue 273
type
sequence Q
description BINDING SITE FOR RESIDUE GOL A 802
source : AC8

33) chain A
residue 275
type
sequence L
description BINDING SITE FOR RESIDUE GOL A 802
source : AC8

34) chain A
residue 146
type
sequence H
description BINDING SITE FOR RESIDUE GOL A 803
source : AC9

35) chain A
residue 150
type
sequence D
description BINDING SITE FOR RESIDUE GOL A 803
source : AC9

36) chain A
residue 157
type
sequence Y
description BINDING SITE FOR RESIDUE GOL A 803
source : AC9

37) chain A
residue 165
type
sequence N
description BINDING SITE FOR RESIDUE GOL A 803
source : AC9

38) chain A
residue 142
type catalytic
sequence H
description 176
source MCSA : MCSA1

39) chain A
residue 143
type catalytic
sequence E
description 176
source MCSA : MCSA1

40) chain A
residue 146
type catalytic
sequence H
description 176
source MCSA : MCSA1

41) chain A
residue 157
type catalytic
sequence Y
description 176
source MCSA : MCSA1

42) chain A
residue 166
type catalytic
sequence E
description 176
source MCSA : MCSA1

43) chain A
residue 226
type catalytic
sequence D
description 176
source MCSA : MCSA1

44) chain A
residue 231
type catalytic
sequence H
description 176
source MCSA : MCSA1

45) chain A
residue 139-148
type prosite
sequence VVAHELTHAV
description ZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature. VVAHELTHAV
source prosite : PS00142

46) chain A
residue 143
type ACT_SITE
sequence E
description ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU10095, ECO:0000269|PubMed:4808703
source Swiss-Prot : SWS_FT_FI1

47) chain A
residue 231
type ACT_SITE
sequence H
description Proton donor => ECO:0000255|PROSITE-ProRule:PRU10095, ECO:0000269|PubMed:4808703
source Swiss-Prot : SWS_FT_FI2

48) chain A
residue 57
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI3

49) chain A
residue 185
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI3

50) chain A
residue 187
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

51) chain A
residue 190
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

52) chain A
residue 193
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI3

53) chain A
residue 194
type BINDING
sequence T
description
source Swiss-Prot : SWS_FT_FI3

54) chain A
residue 197
type BINDING
sequence I
description
source Swiss-Prot : SWS_FT_FI3

55) chain A
residue 200
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI3

56) chain A
residue 59
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI3

57) chain A
residue 61
type BINDING
sequence Q
description
source Swiss-Prot : SWS_FT_FI3

58) chain A
residue 138
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI3

59) chain A
residue 142
type BINDING
sequence H
description
source Swiss-Prot : SWS_FT_FI3

60) chain A
residue 146
type BINDING
sequence H
description
source Swiss-Prot : SWS_FT_FI3

61) chain A
residue 166
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

62) chain A
residue 177
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

63) chain A
residue 183
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI3


Display surface

Download
Links