eF-site ID 3m3j-C
PDB Code 3m3j
Chain C

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Title A new crystal form of Lys48-linked diubiquitin
Classification SIGNALING PROTEIN
Compound Ubiquitin
Source ORGANISM_COMMON: bovine,cow,domestic cattle,domestic cow; ORGANISM_SCIENTIFIC: Bos taurus;
Sequence C:  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Description (1)  Lys48-linked diubiquitin


Functional site

1) chain C
residue 6
type
sequence K
description BINDING SITE FOR RESIDUE EDO A 77
source : AC1

2) chain C
residue 68
type
sequence H
description BINDING SITE FOR RESIDUE EDO A 77
source : AC1

3) chain C
residue 42
type
sequence R
description BINDING SITE FOR RESIDUE SO4 C 77
source : AC3

4) chain C
residue 49
type
sequence Q
description BINDING SITE FOR RESIDUE SO4 C 77
source : AC3

5) chain C
residue 54
type SITE
sequence R
description Interacts with activating enzyme
source Swiss-Prot : SWS_FT_FI1

6) chain C
residue 72
type SITE
sequence R
description Interacts with activating enzyme
source Swiss-Prot : SWS_FT_FI1

7) chain C
residue 68
type SITE
sequence H
description Essential for function
source Swiss-Prot : SWS_FT_FI2

8) chain C
residue 65
type MOD_RES
sequence S
description Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI3

9) chain C
residue 76
type MOD_RES
sequence G
description ADP-ribosylglycine => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI4

10) chain C
residue 6
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

11) chain C
residue 11
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

12) chain C
residue 27
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

13) chain C
residue 29
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

14) chain C
residue 33
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

15) chain C
residue 48
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

16) chain C
residue 63
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

17) chain C
residue 76
type CROSSLNK
sequence G
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|PROSITE-ProRule:PRU00214
source Swiss-Prot : SWS_FT_FI6


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