eF-site ID 3lv8-A
PDB Code 3lv8
Chain A

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Title 1.8 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with TMP, thymidine-5'-diphosphate and ADP
Classification TRANSFERASE
Compound Thymidylate kinase
Source Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (KTHY_VIBCH)
Sequence A:  NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP
GGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVE
NVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSL
KQTALGDFKPDLTLYLDIDPKLGLERELDRIEKMDISFFE
RARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWL
SQVN
Description


Functional site

1) chain A
residue 13
type
sequence G
description BINDING SITE FOR RESIDUE ADP A 213
source : AC1

2) chain A
residue 14
type
sequence A
description BINDING SITE FOR RESIDUE ADP A 213
source : AC1

3) chain A
residue 15
type
sequence G
description BINDING SITE FOR RESIDUE ADP A 213
source : AC1

4) chain A
residue 16
type
sequence K
description BINDING SITE FOR RESIDUE ADP A 213
source : AC1

5) chain A
residue 17
type
sequence S
description BINDING SITE FOR RESIDUE ADP A 213
source : AC1

6) chain A
residue 147
type
sequence R
description BINDING SITE FOR RESIDUE ADP A 213
source : AC1

7) chain A
residue 189
type
sequence Q
description BINDING SITE FOR RESIDUE ADP A 213
source : AC1

8) chain A
residue 190
type
sequence S
description BINDING SITE FOR RESIDUE ADP A 213
source : AC1

9) chain A
residue 191
type
sequence I
description BINDING SITE FOR RESIDUE ADP A 213
source : AC1

10) chain A
residue 194
type
sequence V
description BINDING SITE FOR RESIDUE ADP A 213
source : AC1

11) chain A
residue 12
type
sequence E
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

12) chain A
residue 40
type
sequence E
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

13) chain A
residue 41
type
sequence P
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

14) chain A
residue 51
type
sequence R
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

15) chain A
residue 55
type
sequence K
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

16) chain A
residue 76
type
sequence R
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

17) chain A
residue 98
type
sequence R
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

18) chain A
residue 102
type
sequence S
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

19) chain A
residue 103
type
sequence S
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

20) chain A
residue 106
type
sequence Y
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

21) chain A
residue 107
type
sequence Q
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

22) chain A
residue 157
type
sequence I
description BINDING SITE FOR RESIDUE TMP A 214
source : AC2

23) chain A
residue 12
type
sequence E
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

24) chain A
residue 40
type
sequence E
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

25) chain A
residue 51
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

26) chain A
residue 55
type
sequence K
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

27) chain A
residue 72
type
sequence V
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

28) chain A
residue 76
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

29) chain A
residue 98
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

30) chain A
residue 102
type
sequence S
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

31) chain A
residue 103
type
sequence S
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

32) chain A
residue 106
type
sequence Y
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

33) chain A
residue 107
type
sequence Q
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

34) chain A
residue 158
type
sequence E
description BINDING SITE FOR RESIDUE TYD A 215
source : AC3

35) chain A
residue 92
type
sequence E
description BINDING SITE FOR RESIDUE CA A 216
source : AC4

36) chain A
residue 12
type
sequence E
description BINDING SITE FOR RESIDUE CA A 218
source : AC6

37) chain A
residue 158
type
sequence E
description BINDING SITE FOR RESIDUE CA A 218
source : AC6

38) chain A
residue 176
type
sequence A
description BINDING SITE FOR RESIDUE CA A 219
source : AC7

39) chain A
residue 179
type
sequence D
description BINDING SITE FOR RESIDUE CA A 219
source : AC7

40) chain A
residue 182
type
sequence V
description BINDING SITE FOR RESIDUE CA A 219
source : AC7

41) chain A
residue 177
type
sequence N
description BINDING SITE FOR RESIDUE CA A 220
source : AC8

42) chain A
residue 130
type
sequence K
description BINDING SITE FOR RESIDUE CA A 221
source : AC9

43) chain A
residue 111
type
sequence R
description BINDING SITE FOR RESIDUE CL A 222
source : BC1

44) chain A
residue 10
type BINDING
sequence G
description BINDING => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

45) chain A
residue 95-107
type prosite
sequence VGDRHDMSSQAYQ
description THYMIDYLATE_KINASE Thymidylate kinase signature. VGDRHdmSSqAYQ
source prosite : PS01331


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