eF-site ID 3kyc-B
PDB Code 3kyc
Chain B

click to enlarge
Title Human SUMO E1 complex with a SUMO1-AMP mimic
Classification LIGASE
Compound SUMO-activating enzyme subunit 1
Source Homo sapiens (Human) (SUMO1_HUMAN)
Sequence B:  RGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHI
DLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFY
PKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNH
VNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPK
PTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQ
EVSPDRADPEAAWIKRISTKEWAKSTGYDPVKLFTKLFKD
DIRYLLTMDKLWRKRKPPVPLDWAEVQSQGLGLKDQQVLD
VKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDF
VTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVI
AGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCAL
DPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFA
MVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNG
SRLQADDFLQDYTLLINILHSEDLGKDVEFEVVGERSRKR
KLDEKENLSAKRSRIEQKEELDDVIALD
Description


Functional site

1) chain B
residue 158
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 641
source : AC1

2) chain B
residue 161
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 641
source : AC1

3) chain B
residue 441
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 641
source : AC1

4) chain B
residue 444
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 641
source : AC1

5) chain B
residue 26
type
sequence G
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

6) chain B
residue 27
type
sequence G
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

7) chain B
residue 48
type
sequence D
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

8) chain B
residue 49
type
sequence L
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

9) chain B
residue 50
type
sequence D
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

10) chain B
residue 60
type
sequence Q
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

11) chain B
residue 72
type
sequence K
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

12) chain B
residue 94
type
sequence D
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

13) chain B
residue 95
type
sequence S
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

14) chain B
residue 96
type
sequence I
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

15) chain B
residue 97
type
sequence M
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

16) chain B
residue 115
type
sequence A
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

17) chain B
residue 116
type
sequence L
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

18) chain B
residue 117
type
sequence D
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

19) chain B
residue 118
type
sequence N
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

20) chain B
residue 121
type
sequence A
description BINDING SITE FOR RESIDUE JZU D 98
source : AC2

21) chain B
residue 257
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI12

22) chain B
residue 420
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI12

23) chain B
residue 271
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO); alternate
source Swiss-Prot : SWS_FT_FI13

24) chain B
residue 613
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO); alternate
source Swiss-Prot : SWS_FT_FI13

25) chain B
residue 371
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI14

26) chain B
residue 540
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI14

27) chain B
residue 404-412
type prosite
sequence KILSGKIDQ
description UBIQUITIN_ACTIVAT_1 Ubiquitin-activating enzyme signature 1. KILSGKIdQ
source prosite : PS00536

28) chain B
residue 171-179
type prosite
sequence PGCTIRNTP
description UBIQUITIN_ACTIVAT_2 Ubiquitin-activating enzyme active site. PGCTIRnTP
source prosite : PS00865

29) chain B
residue 24
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:15660128
source Swiss-Prot : SWS_FT_FI2

30) chain B
residue 48
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:15660128
source Swiss-Prot : SWS_FT_FI2

31) chain B
residue 56
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:15660128
source Swiss-Prot : SWS_FT_FI2

32) chain B
residue 72
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:15660128
source Swiss-Prot : SWS_FT_FI2

33) chain B
residue 95
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:15660128
source Swiss-Prot : SWS_FT_FI2

34) chain B
residue 117
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:15660128
source Swiss-Prot : SWS_FT_FI2

35) chain B
residue 236
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:25772364, ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI11

36) chain B
residue 207
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:24275569
source Swiss-Prot : SWS_FT_FI4

37) chain B
residue 271
type MOD_RES
sequence K
description N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI5

38) chain B
residue 158
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI3

39) chain B
residue 161
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI3

40) chain B
residue 441
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI3

41) chain B
residue 444
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI3

42) chain B
residue 173
type ACT_SITE
sequence C
description Glycyl thioester intermediate => ECO:0000255|PROSITE-ProRule:PRU10132, ECO:0000269|PubMed:15660128, ECO:0000269|PubMed:20164921
source Swiss-Prot : SWS_FT_FI1

43) chain B
residue 507
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI6

44) chain B
residue 613
type MOD_RES
sequence K
description N6-acetyllysine; alternate => ECO:0000250|UniProtKB:Q9Z1F9
source Swiss-Prot : SWS_FT_FI8

45) chain B
residue 164
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1) => ECO:0007744|PubMed:25114211
source Swiss-Prot : SWS_FT_FI9

46) chain B
residue 190
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
source Swiss-Prot : SWS_FT_FI10

47) chain B
residue 275
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
source Swiss-Prot : SWS_FT_FI10

48) chain B
residue 611
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
source Swiss-Prot : SWS_FT_FI10

49) chain B
residue 617
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
source Swiss-Prot : SWS_FT_FI10

50) chain B
residue 623
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
source Swiss-Prot : SWS_FT_FI10


Display surface

Download
Links