eF-site ID 3jad-E
PDB Code 3jad
Chain E

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Title Structure of alpha-1 glycine receptor by single particle electron cryo-microscopy, strychnine-bound state
Classification SIGNALING PROTEIN/ANTAGONIST
Compound Glycine receptor subunit alphaZ1
Source (3JAD)
Sequence E:  APSEFLDKLMGKVSGYDARIRPNFKGPPVNVTCNIFINSF
GSIAETTMDYRVNIFLRQQWNDPRLAYSEYPDDSLDLDPS
MLDSIWKPDLFFANEKGANFHEVTTDNKLLRISKNGNVLY
SIRITLVLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIF
EWDEKGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFT
CIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDA
APARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMA
VCLLFVFSALLEYAAVNFIARKLFISRAKRIDTVSRVAFP
LVFLIFNIFYWITYKLV
Description (1)  zebra fish alpha1 glycine receptor


Functional site

1) chain E
residue 239-260
type TRANSMEM
sequence YLIQMYIPSLLIVILSWVSFWI
description Helical; Name=1 => ECO:0000269|PubMed:26344198
source Swiss-Prot : SWS_FT_FI1

2) chain E
residue 54
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255, ECO:0000269|PubMed:26344198
source Swiss-Prot : SWS_FT_FI10

3) chain E
residue 261-265
type TOPO_DOM
sequence NMDAA
description Cytoplasmic => ECO:0000269|PubMed:26344198
source Swiss-Prot : SWS_FT_FI2

4) chain E
residue 266-286
type TRANSMEM
sequence PARVGLGITTVLTMTTQSSGS
description Helical; Name=2 => ECO:0000269|PubMed:26344198
source Swiss-Prot : SWS_FT_FI3

5) chain E
residue 287-297
type TOPO_DOM
sequence RASLPKVSYVK
description Extracellular => ECO:0000269|PubMed:26344198
source Swiss-Prot : SWS_FT_FI4

6) chain E
residue 298-318
type TRANSMEM
sequence AIDIWMAVCLLFVFSALLEYA
description Helical; Name=3 => ECO:0000269|PubMed:26344198
source Swiss-Prot : SWS_FT_FI5

7) chain E
residue 208
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:P23415
source Swiss-Prot : SWS_FT_FI7

8) chain E
residue 210
type BINDING
sequence D
description BINDING => ECO:0000250|UniProtKB:P23415
source Swiss-Prot : SWS_FT_FI7

9) chain E
residue 231
type BINDING
sequence H
description BINDING => ECO:0000250|UniProtKB:P23415
source Swiss-Prot : SWS_FT_FI7

10) chain E
residue 218
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:26344198
source Swiss-Prot : SWS_FT_FI8

11) chain E
residue 277
type SITE
sequence L
description Important for obstruction of the ion pore in the closed conformation => ECO:0000269|PubMed:26344198
source Swiss-Prot : SWS_FT_FI9


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