eF-site ID 3j7a-7A
PDB Code 3j7a
Chain 7, A

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Title Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
Classification RIBOSOME/INHIBITOR
Compound 18S ribosomal RNA
Source ORGANISM_SCIENTIFIC: Plasmodium falciparum;
Sequence 7:  GGGUAAUUGGCGCAGUUGGUUAGCGCGCGGGUCUCAUAAU
CCCGAGGUCGUGAGUUCGAUCCUCACAUUACCCA
A:  AACCUGGUUGAUCUUGCCAGUAGUCAUAUGCUUGUCUCAA
AGAUUAAGCCAUGCAAGUGAAAGUAUAUAUAUAUAUAUGU
AGAAACUGCGAACGGCUCAUUAAAACAGUUAUAGUCUACU
UGACAUUUAUAAGGAUAACUACGGAAAAGCUGUAGCUAAU
ACUUGCAUUAUCCUUUUGGAUAAGUAUUUGUUAGAAGGAA
UUAUAACAAAGAAGUAACACGUAAAGUGUGUAUCAAUCGA
GUUUCUGACCUAUCAGCUUUUGAUGUUAGGGUAUUGGCCU
AACAUGGCUAUGACGGGUAACGGGGAAUUAGAGUUCGAUU
CCGGAGAGGGAGCCUGAGAAAUAGCUACCACAUCUAAGGA
AGGCAGCAGGCGCGUAAAUUACCCAAUUCUAAAGAAGAGA
GGUAGUGACAAGAAAUAACAAUGCAAGGUUUGUAUUGGAA
UGGUGGGAAUUUAAAACCUUCCCAGAGUAACAAUUGGAGG
GCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAA
UAGCGUAUAUUAAAAUUGUUGCAGUUAAAACGCUCGUAGU
UGAAUUUCAAAGAAUCAUUCUUUUUAAAAUCCGGAUUUGU
UACUUUGAGUAAAUUAGAGUGUUCAAAGCAAACAGUUAAA
GCAUUGUGUUUGAAUACUAUAGCAUGGAAUAACAAAAUUG
AACAAGCUAAAAUUUUUUGUUCUUAUUUUGGCUUAGUUAC
GAUUAAUAGGAGUAGCUUGGGGACAUUCGUAUUCAGAUGU
CAGAGGUGAAAUUCUUAGAUUUUCUGGAGACGAACAACUG
CGAAAGCAUUUGUCUAAAAUACUUCCAUUAAUCAAGAACG
AAAGUUAAGGGAGUGAAGACGAUCAGAUACCGUCGUAAUC
UUAACCAUAAACUAUGCCGACUAGGUGUUGGAUGAAGUGC
UUCCUUCAGUACCUUAUGAGAAAUCAAAGUCUUUGGGUUC
UGGGGCGAGUAUUCGCGCAAGCGAGAAAGUUAAAAGAAUU
GACGGAAGGGCACCACCAGGCGUGGAGCUUGCGGCUUAAU
UUGACUCAACACGGGGAAACUCACUAGUUUAAGACAUUGG
AUGGUGAUGCAUGGCCGUUUUUAGUUCGUGAAUGAUUUGU
CUGGUUAAUUCCGAUAACGAACGAGAUCUUAACCUGCUAA
UUAGCGGCGAGUACACUGUACUUGCUGCUUCUUAGAGGAA
CAUUGUGUGUCUAACACAAGGAAGUUUAAGGCAACAACAG
GUCUGUGAUGUCCUUAGAUGAACUAGGCUGCACGCGUGCU
ACACUGAUAUAUAUAACGAGUAAAAUAUGCUUGCAUACUU
UUCCUCCGCCGAAAGGCGUAGGUAAUCUUUAUCAAUAUAU
AUCGUGAUGGGGAUAGAUUAUUGCAAUUAUUAAUCUUGAA
CGAGGAAUGCCUAGUAAGCAUGAUUCAUCAGAUUGUGCUG
ACUACGUCCCUGCCCUUUGUACACACCGCCCGUCGCUCCU
ACCGAUUGAAAGAUAUGAUGAAUUGUUUGGACAAGAAAAA
UUUUUUCUGGAAAAACCGUAAAUCCUAUCUUUUAAAGGAA
GGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGA
AGGAUCAU
Description (1)  PROTEIN/RNA Complex


Functional site

1) chain A
residue 10
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2101
source : AC1

2) chain A
residue 1930
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2101
source : AC1

3) chain A
residue 16
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2102
source : AC2

4) chain A
residue 102
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2103
source : AC3

5) chain A
residue 367
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2103
source : AC3

6) chain A
residue 102
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2104
source : AC4

7) chain A
residue 103
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2104
source : AC4

8) chain A
residue 104
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2104
source : AC4

9) chain A
residue 366
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2104
source : AC4

10) chain A
residue 367
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2104
source : AC4

11) chain A
residue 49
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2105
source : AC5

12) chain A
residue 431
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2105
source : AC5

13) chain A
residue 452
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2106
source : AC6

14) chain A
residue 454
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2106
source : AC6

15) chain A
residue 60
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2107
source : AC7

16) chain A
residue 459
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2107
source : AC7

17) chain A
residue 87
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2108
source : AC8

18) chain A
residue 97
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2109
source : AC9

19) chain A
residue 408
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2111
source : BC1

20) chain A
residue 328
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2112
source : BC2

21) chain A
residue 343
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2112
source : BC2

22) chain A
residue 347
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2112
source : BC2

23) chain A
residue 42
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2113
source : BC3

24) chain A
residue 43
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2113
source : BC3

25) chain A
residue 100
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2113
source : BC3

26) chain A
residue 44
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2114
source : BC4

27) chain A
residue 47
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2114
source : BC4

28) chain A
residue 435
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2115
source : BC5

29) chain A
residue 383
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2116
source : BC6

30) chain A
residue 384
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2116
source : BC6

31) chain A
residue 385
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2116
source : BC6

32) chain A
residue 407
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2117
source : BC7

33) chain A
residue 408
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2117
source : BC7

34) chain A
residue 430
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2118
source : BC8

35) chain A
residue 432
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2118
source : BC8

36) chain A
residue 466
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2119
source : BC9

37) chain A
residue 467
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2119
source : BC9

38) chain A
residue 28
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2120
source : CC1

39) chain A
residue 35
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2121
source : CC2

40) chain A
residue 522
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2121
source : CC2

41) chain A
residue 537
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2121
source : CC2

42) chain A
residue 568
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2123
source : CC3

43) chain A
residue 577
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2124
source : CC4

44) chain A
residue 578
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2124
source : CC4

45) chain A
residue 611
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2125
source : CC5

46) chain A
residue 377
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2126
source : CC6

47) chain A
residue 612
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2126
source : CC6

48) chain A
residue 614
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2126
source : CC6

49) chain A
residue 621
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2127
source : CC7

50) chain A
residue 625
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2128
source : CC8

51) chain A
residue 626
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2128
source : CC8

52) chain A
residue 627
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2128
source : CC8

53) chain A
residue 628
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2128
source : CC8

54) chain A
residue 630
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2129
source : CC9

55) chain A
residue 629
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2130
source : DC1

56) chain A
residue 630
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2130
source : DC1

57) chain A
residue 632
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2130
source : DC1

58) chain A
residue 1100
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2130
source : DC1

59) chain A
residue 637
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2131
source : DC2

60) chain A
residue 638
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2131
source : DC2

61) chain A
residue 642
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2132
source : DC3

62) chain A
residue 643
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2132
source : DC3

63) chain A
residue 930
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2133
source : DC4

64) chain A
residue 931
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2133
source : DC4

65) chain A
residue 1007
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2135
source : DC5

66) chain A
residue 1059
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2136
source : DC6

67) chain A
residue 1060
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2136
source : DC6

68) chain A
residue 1080
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2136
source : DC6

69) chain A
residue 1081
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2137
source : DC7

70) chain A
residue 1054
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2138
source : DC8

71) chain A
residue 964
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2139
source : DC9

72) chain A
residue 965
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2139
source : DC9

73) chain A
residue 983
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2139
source : DC9

74) chain A
residue 984
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2139
source : DC9

75) chain A
residue 986
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2139
source : DC9

76) chain A
residue 997
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2140
source : EC1

77) chain A
residue 998
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2140
source : EC1

78) chain A
residue 945
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2141
source : EC2

79) chain A
residue 1011
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2142
source : EC3

80) chain A
residue 1047
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2143
source : EC4

81) chain A
residue 1037
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2144
source : EC5

82) chain A
residue 1094
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2145
source : EC6

83) chain A
residue 1210
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2146
source : EC7

84) chain A
residue 1211
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2146
source : EC7

85) chain A
residue 1261
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2147
source : EC8

86) chain A
residue 1876
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2147
source : EC8

87) chain A
residue 1926
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2148
source : EC9

88) chain A
residue 1927
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2148
source : EC9

89) chain A
residue 2085
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2148
source : EC9

90) chain A
residue 2055
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2149
source : FC1

91) chain A
residue 2059
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2149
source : FC1

92) chain A
residue 2060
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2149
source : FC1

93) chain A
residue 2062
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2149
source : FC1

94) chain A
residue 2063
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2149
source : FC1

95) chain A
residue 2062
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2150
source : FC2

96) chain A
residue 2053
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2151
source : FC3

97) chain A
residue 2054
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2151
source : FC3

98) chain A
residue 2055
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2151
source : FC3

99) chain A
residue 2059
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2151
source : FC3

100) chain A
residue 2060
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2151
source : FC3

101) chain A
residue 20
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2152
source : FC4

102) chain A
residue 21
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2152
source : FC4

103) chain A
residue 521
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2153
source : FC5

104) chain A
residue 1405
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2154
source : FC6

105) chain A
residue 1406
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2154
source : FC6

106) chain A
residue 169
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2155
source : FC7

107) chain A
residue 170
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2155
source : FC7

108) chain A
residue 394
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2156
source : FC8

109) chain A
residue 408
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2156
source : FC8

110) chain A
residue 559
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2157
source : FC9

111) chain A
residue 560
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2157
source : FC9

112) chain A
residue 561
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2157
source : FC9

113) chain A
residue 562
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2157
source : FC9

114) chain A
residue 563
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2157
source : FC9

115) chain A
residue 1062
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2158
source : GC1

116) chain A
residue 1074
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2158
source : GC1

117) chain A
residue 1063
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2159
source : GC2

118) chain A
residue 1074
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2159
source : GC2

119) chain A
residue 1084
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2160
source : GC3

120) chain A
residue 1432
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2161
source : GC4

121) chain A
residue 1430
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2162
source : GC5

122) chain A
residue 1432
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2162
source : GC5

123) chain A
residue 1374
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2163
source : GC6

124) chain A
residue 1375
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2163
source : GC6

125) chain A
residue 1674
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2163
source : GC6

126) chain A
residue 1675
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2163
source : GC6

127) chain A
residue 1305
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2164
source : GC7

128) chain A
residue 1306
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2164
source : GC7

129) chain A
residue 1307
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2164
source : GC7

130) chain A
residue 1701
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2164
source : GC7

131) chain A
residue 1303
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2165
source : GC8

132) chain A
residue 1304
type
sequence A
description BINDING SITE FOR RESIDUE MG A 2165
source : GC8

133) chain A
residue 1896
type
sequence C
description BINDING SITE FOR RESIDUE MG A 2165
source : GC8

134) chain A
residue 1703
type
sequence U
description BINDING SITE FOR RESIDUE MG A 2166
source : GC9

135) chain A
residue 1302
type
sequence G
description BINDING SITE FOR RESIDUE MG A 2167
source : HC1

136) chain A
residue 973
type
sequence G
description BINDING SITE FOR RESIDUE 34G A 2168
source : HC2

137) chain A
residue 1068
type
sequence U
description BINDING SITE FOR RESIDUE 34G A 2168
source : HC2

138) chain A
residue 1075
type
sequence C
description BINDING SITE FOR RESIDUE 34G A 2168
source : HC2

139) chain A
residue 2060
type
sequence G
description BINDING SITE FOR RESIDUE 34G A 2168
source : HC2

140) chain A
residue 2061
type
sequence U
description BINDING SITE FOR RESIDUE 34G A 2168
source : HC2


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