eF-site ID 3j6b-0123456789BCDEFGHIJKLMNOPQRSTUVWXYZabcd PDB Code 3j6b Chain 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d Title Structure of the yeast mitochondrial large ribosomal subunit Classification RIBOSOME Compound 21S ribosomal RNA Source ORGANISM_COMMON: yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; Sequence 0:  FKVRTSVKKFCSDCYLVRRKGRVYIYCKSNKKHKQRQG 1:  HIWSDFTTRPSSLSIQSSKVKNYLFQPSISRRSNRIKYSP PEHIDEIFRMSYDFLEQRSSKFYENPLKKDALLIKAEINN PEVQYNFQFNNKLNNVKDIIDYDVPVYRHLGKQHWESYGQ MLLMQRLETLAAIPDTLPTLVPRAEVNIKFPFSTGVNKWI EPGEFLSSNVTSMRPIFKIQEYELVNVEKQLYTVLIVNPD VPDLSNDSFKTALCYGLVNINLTYNDNLIDPRKFHSSNII ADYLPPVPEKNAGKQRFVVWVFRQPLIQGPNMLEIDRKEL SRDDFDIRQFTKKYNLTAIGAHIWRSEWDAKVAAVREKYG LPPGRVFSRVRR 2:  SLSPLAQRVVTQLSVMSASRKQPKLLKLAREDLIKHQTIE KCWSIYQQQQRERRNLQLELQYKSIERSMNLLQELSPRLF EAANASEKGKRFPMEMKVPTDFPPNTLWHYNFR 3:  LTRPWKKYRDGELFYGLSKVGNKRVPLTTKQGNKTMYKGT RASGIGRHTKFGGYVINWKKVRTYVTPDMVNFELKPYVNA NVPPLKHEFKGGGPLDPRLQLLKIKEYIVNGRVQSEGATD SCYKER 4:  VVKAIARNSIGRNGVGAFVFPCRKITLQFCNWGGSSEGMR KFLTSKRLDKWGQEFPWIQFEVMRKSGHPLLRAEYTNGRE KVICVRNLNIDNVENKLKLLKDSDGDILRRRTKNDNVESL NSSVRGIWSPLHAAKRHR 5:  LPESELAKYKEYYQGLKSTVNEIPESVASKSPSLRTLHKR LQLPNELTYSTLSRCLTCPSAKLPDKINNPTKGAAFVNTV PTNKYLDNHGLNIMGKNLLSYHVTKSIIQKYPRLPTVVLN AAVNAYISEAVLAHIAKYWGIEVETTSVLSRYLKMEPFEF TLGRLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSII AAIWAVTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPT RELAMLCRREGLEKPVSKLVAESGRLSKSPVFIVHVFSGE ETLGEGYGSSLKEAKARAATDALMKWYCYEPLAQQEPVID PGTVVV 6:  PKIKVGVLLSRIPIIKSELNELEKKYYEYQSELEKRLMWT FPAYFYFKKGTVAEHKFLSLQKGPISKKNGIWFPRGIPDI KHGRERSTKQEVKLVNRPVIPNDRITEADRSNDMKSLERQ LSRTLYLLVKDTWKFPNFDESKPLHVHAENELKLLSGIYT WSVSATPIGVFIVKSHILAGEDFAWLTKGEISEYVPKDYF NKTEFLLAD 7:  APIFPKLEDVKMHELIGNNNFGKKTYYVERSRTGNLPVYS AYKNGGNKIITEIRKIEGDVIQLRNDLQEQLPFIPKKSWS VVMQSKKIIIKGNAVEAVKRVLTKKF 8:  KNRLELIPENFIGEGSRRCKRQKELKLAVSSAPFNQWLSR DKSDNQLDDMILQATEKTLGKVDQDVQFSDLVAKFQFTKF LQSKSGYLIPDYELTTLSTPLQFKRYIKEKILPSANDPKL AYKEAEPNAIHPFSDNYASPNIYVVNDVTSKEQKSKYDTI MKEIQKLEDDATRKALETARSA 9:  VIYLHKGPRINGLRRDPESYLRNPSGVLFTEVKECQDKVR SILQLPKYGINLSNELILQCLTHKSFAHGSKPYNEKLNLL GAQFLKLQTCIHSLKNLQFSNLGTKFAKELTSKNTACTFV KLHNLGPFIFWKMRDPIKGHINGETTIFASVLNAFIGAIL STNGSEKAAKFIQGSLLDKEHSLVNIANENVASAK B:  LIKRRRKLSKEVTQMKRLKPVSPGLRWYRSPIYPYLYKGR PVRALTVVRKKHGGRNNSGKITVRHQGGGHRNRTRLIDFN RWEGGAQTVQRIEYDPGRSSHIALLKHNTTGELSYIIACD GLRPGDVVESFRRGIPLSVKTTQRGNCLPISMIPIGTIIH NVGITPVGPGKFCRSAGTYARVLAKLPEKKKAIVRLQSGE HRYVSLEAVATIGVVSNIDHQNRSLGKAGRSRWLGIRPTV RGVAMNKCDHPHGGGRGKSKSNKLSMSPWGQLAKGYKTRR GKNQNRMKVKDRPRG C:  STRPFLVAPSIANSITTEAPAINHSPELANARKWLPKRCG LITRKKGMMPYFDKSTGERSAATILEVNNVEVIMHRTSEV NGYFACQVGYGSRHLSKVSRQMLGHFASKVVNPKEHVAEF RVKDEKGLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFTGV MKRYGFKGLRASHGTSIMHRHGGSYGQNQDPGRVLPGRKM PGHMGNEHVTIQNVKVLKVDDENNVIWVKGSVAGPKNSFV KIQDAIKKT D:  PLPNAAIPPKYALVTVRSFPSLEPLTFVPVPTSTVAAPLR RDILWRAVVYENDNRRVGASNPPGRSENGFSRRKLMPQKG SGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSM AFNNALSHQYKSGKLFVIGGEKVDLISPTPELDLNRLDLI FEGEVIFRKFLEEFQLKGKRLLFITDKTREGLIKSSDPYK QKVDVIQKELVEVNDILRAQAVFIELEALEYLAMAHQKE E:  PKSACSLVKPVHHLVKIDKSKLSPRFPELKYDKSDIRSPG FKPKDTHADRLNDHYLNTLQSDLLLINYSHNAAVVKGLKQ RAWSGDSPYHLNRPPKNPRGSKAQLPDIHPIKWSNIPGLE SVVINCFVREARENQLLAITAALQLQQITGCKPHPIFSKN DVPTWKLRKGHQMGAKVELKGKEMSQFLSTLTEIVLPRIR EYKGISNQSGNRFGGISFGLTAEDIKFFPEIDANQDSWPK TFGMHININTSAQLDYQARTLLSGFQFPFFGEEK F:  QVGSLPLYISPEVQVSINALSMPRIIRKTSMNISQNITVK GPKGELSVEVPDFLHLDKDEKINVTVQEDKHQRSMWGTVR SLINNHIIGVTEGHLAVLRFVGTGYRAQLEGKFVNVKVGA SIKQGLDVPEGIVVKTPAPTSLIIEGCNKQQVLLFAAKLR KFHPPEPYGKGIYVNDETIKLKDKK G:  SALTKRTHRVKVQVLKDFPRFQLYKGQVANVKPSLMRNYL HNFNGAKYILSEEHD H:  SQKIGHSGLAFARLWHHVDVARDKRTLGRLASAIAITLIG RHKPVYHPSQDCGDYVVVTNCQKIRVTGKKFEQKTYWSHS GRPGQLKLQTMNKVVADKGFGEILKKAVSGMLPKNKLRKQ RLDRLKVFDGSENPYKQNITAFAHEQSS I:  MIFLKSVIKVIDNSGAQLAECIKVIRKGSPKSPAMVGDRI VCVIQKAKPVKKGDICHAIVVRSKQRNMCRKDGSTVAFGD TACVLINKNTGEPLGTRIMANDGCVDRTLKDKGYNKICSL ASRVI J:  VSILGQLKPSDGSTKSFKRLGRGPSSGLGKTSGRGQKGQK ARGKVKSWFEGGQTPIYKLFPKIGFTNVGAKPLKELNLKR IQWFHDKNRLHLQPGEVLDMNKMRKLGLVTGPIKYGVKIL ASGKFHYNLPIALEASRASAKAIAAIEKAGGKFTARYYTP LGLRAHLNPQWFLEKRGRVPLQARPTKRRDIDFYSKEEKR GYLVMEKDKLLQDIKEAQNK K:  KHEYAPRFKIVQKKQKGRVPVRTGGSIKGSTLQFGKYGLR LKSEGIRISAQQLKEADNAIMRYVRPLNNGHLWRRLCTNV AVCIKGNETRMGKGKGGFDHWMVRVPTGKILFEINGDDLH EKVAREAFRKAGTKLPGVYEFVSLDSLVRVGLHSFKNPKD DPVKNFYDENAKKPSKKYLNILKSQEPQYKLFRGR L:  TVGIARKLSRDKAHRDALLKNLACQLFQHESIVSTHAKCK EASRVAERIITWTKRAITTSNSVAQAELKSQIQSQLFLAG DNRKLMKRLFSEIAPRYLERPGGYTRVLRLEPRANDSAPQ SVLELVDSPVMSESHTVNRGNLKMWLLVKSVINDDANQLP HNPLTLQNLHKVAKFKAEAQLHGEIMLIKQVLLKEMSLPY DEALENERTQALLKEVYSSSSSYVMVPRP M:  YMVPATKRKTIPVYPPVQRIASSQIMKQVALSEIESLDPG AVKRKLISKKNKDRLKAGDVVRIVYDSSKCSYDTFVGYIL SIDRKQLVQDASLLLRNQIAKTAVEIRVPLFSPLIERIDL LTPHVSSRQRNKHYYIRGTRLDVGDLEAGLR N:  TDTTPLKLSNELYAIFKIHNRPYLVTEGDRVILPFKLKQA EVGDILNMTDVTTLGSRNYKLVGHPINTSLYTLKATVVGK TKRAFQTREVTKRRNRRVRHAKSKGDLTILRISELSMN O:  ITIEDKLLQQHIISLQQPEQLASQSLLSPLKREIYEANCK INGGFYKKDTIVKLPNSSERYKLKLTKREIEVLEPSVYAQ SYRIKSSMKKATLLLRLLGGLDVMKAISQCHFSNKKIARE VAELLQKGVKDGQKLGLKPEDLYISQIWTGSDGFWRKRVE FKARTRIGIISHPYIHVRCILRTKSVTKRRLAYEAHLKEQ KRAPWVQLGDKPIRGVTGGVYKW P:  DINVSEKIYKWTKAGIEQGKEHFKVGGNKVYFPKARIILL RPNAKHTPYQAKFIVPKSFNKLDLRDYLYHIYGLRAMNIT TQLLHGKFNRMNLQTTRFREPQIKKMTIEMEEPFIWPEEP RPDENSFWDSTTPDNMEKYREERLNCLGSDANKPGTAFDG VVGPYERVAQPFIPRFLKREIDNKRERHAAELQRADKLIA LNRYIED Q:  SGSYQHLSNVGSRVMKRLGNRPKNFLPHSEKFIKKSTPEF MKSDLKEVDEKTSFKKEWKFIPGDRVVVMSGASKGNIAVI KSFDKRTNSFILDENGPTKTVPVPKQFWLEGQTSHMITIP VSILGKDLRLVATVAVRDVSFNGSYYDAYKKVMPYRCVQP DLIIPWPKPDPIDVQTNLATDPVIAREQTFWVDSVVRNPI PKKAIPSIRNPHSKYKRGTLTAKDIAKLVAPEMPLTEVRK SHLAEKKELAEREVPKLTEEDMEAIGARVFEFLEKQKRE R:  SRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPG ENVGIGKDHSIFALEPGVVRYYLDPFHPKRKFIGVALRRD LKLPSPHFEPTVRRFGRFELTNKRAAYKEENSISRKDYLA KPNILKQLEVRESKRKELQDKLSKVLRDELKLDDIELATS YLIRVRASLKNGYPIEDARFNSRYYLKEEERLKARRESWT NEKLSESLSKIDECSDLLNSSTSFNNKLELHQYISEQEKQ ALKAKLLEDLEKSQHLETKKDKNYIKALFKDACNFLTLSE EVHLRRKYLKSVFPVSRRFDYTKVEVIARSRRAFLSKL S:  RQWRLIETRKIAKQPNYQKPLHMPKERKKFPDYKYGESNI FKQSNKGLYGGSFVQFGNNISESKAKTRKKWLPNVVKKGL WSETLNRKISIKMTAKVLKTISKEGGIDNYLTKEKSARIK ELGPTGWKLRYRVLKRKDEIENPPHK T:  ARTKFTKPKPKQPVLPKDKIRPPTQLTHHSNNLRITEPIP PTTSNLRCPDDHPLWQFFSNKKFIRSADDLPPSSHIRPWS IPELRHKSFNDLHSLWYNCLREQNVLARENHLLKNIVGST HDEFSELSNSIRTTMWQIRHVLNERELAYSASREFLQDES ERKKFLDTLANDYFDDEVASMLTRFQLAIFGDINFIDGIK FLANLKLQR U:  VFYKVTLSRSLIGVPHTTKSIVKSLGLGKRGSIVYKKVNP AIAGSLAKVKELVKVEVTEHELTPSQQRELRKSNPGFIVE KR V:  TRITLPRRPAKKIQLGKSRPAIYHQFNVKMELSDGSVVIR RSQYPKGEIRLIQDQRNNPLWNPS W:  AVPKKKVSHQKKRQKLYGPGKKQLKMIHHLNKCPSCGHYK RANTLCMYCVGQISHIWKTHTAKEEIKPRQEEELSELDQR VLYPGRRDTKYTKDLKDKDNYLERRVRTLKKD X:  SKNSVIKLLSTAASGYSRYISIKKGAPLVTQVRYDPVVKR HVLFKEAKKRKVAERKPLDFLRTA Y:  SRGNTYQPSTLKRKRTFGFLARAKSKQGSKILKRRKLKGR WFLSH Z:  LMKTHKGTAKRWRRTGNTFKRGIAGRKHGNIGWSHRSLKA LTGRKIAHPAYSKHLKRLLPYH a:  QFGFPKTQVTTIYNKTKSASNYKGYLKHRDAPGMYYQPSE SIATGSVNSETIPRSFMAASDPRRGLDMPVQSTKAKQCPN VLVGKSTVNGKTYHLGPQEIDEIRKLRLDNPQKYTRKFLA AKYGISPLFVSMVSKPSEQHVQIMESRLQEIQSRWKEKRR IAREDRKRRKLLWYQA b:  YKQYFDSLPLKLKSFFQRYPPSIKYSPVSTSTKAINANPF LPNKHPVTQRFHDPKYSLRRMSDVYKLALRYGVEEFLPPI ENTKKLFFEEKYNKKTLMKGVLLPKGHKHELKLNEKLKKR EEALKKVDELIASKKGSKYAKRVEKMKKNQSIGWF c:  GLLWKIPWRMSTHQKTRQRERLRNVDQVIKQLTLGLHVQR CQDKGLTYQEAMESKKKYKPRSKSLRLLNKPSVFPKENQM SSKDKYWTFDKKAVGYRKGIHKVPKWTKISIRKAPKFF d:  KVNHSISRFRPASWFEKTKIIPPQVYIFRNLEYGQVLYSQ FPNFSQTQVDKLFVRPNWSNRKPSLRRDIWKCMCVVNLQN YKQSVHLYQNLCRLRYLRDVAQRKESDKLRKKDSNGHVWY SGQYRPTYCQEAVADLRESLLKVFENAAKKPSIYWEDPWR MGDKDKHWNYDVFNALGLEHKLIQRVGNIAREESVILKEL AKLE Description Functional site 1) chain R residue 42 type sequence S description BINDING SITE FOR RESIDUE MG A 3342 source : CC7 2) chain B residue 334 type sequence R description BINDING SITE FOR RESIDUE MG A 3355 source : EC2 3) chain c residue 16 type sequence L description BINDING SITE FOR RESIDUE MG A 3358 source : EC5 4) chain b residue 55 type sequence D description BINDING SITE FOR RESIDUE MG A 3390 source : HC6 5) chain J residue 84 type sequence G description BINDING SITE FOR RESIDUE MG A 3395 source : IC2 6) chain B residue 345 type sequence H description BINDING SITE FOR RESIDUE NA B 500 source : JC7 7) chain B residue 346 type sequence G description BINDING SITE FOR RESIDUE NA B 500 source : JC7 8) chain B residue 347 type sequence G description BINDING SITE FOR RESIDUE NA B 500 source : JC7 9) chain B residue 352 type sequence S description BINDING SITE FOR RESIDUE NA B 500 source : JC7 10) chain B residue 354 type sequence S description BINDING SITE FOR RESIDUE NA B 500 source : JC7 11) chain N residue 134 type sequence T description BINDING SITE FOR RESIDUE MG N 201 source : JC8 12) chain N residue 135 type sequence K description BINDING SITE FOR RESIDUE MG N 201 source : JC8 13) chain N residue 138 type sequence N description BINDING SITE FOR RESIDUE MG N 201 source : JC8 14) chain W residue 104 type sequence C description BINDING SITE FOR RESIDUE ZN W 200 source : JC9 15) chain W residue 106 type sequence S description BINDING SITE FOR RESIDUE ZN W 200 source : JC9 16) chain W residue 107 type sequence C description BINDING SITE FOR RESIDUE ZN W 200 source : JC9 17) chain W residue 117 type sequence C description BINDING SITE FOR RESIDUE ZN W 200 source : JC9 18) chain W residue 120 type sequence C description BINDING SITE FOR RESIDUE ZN W 200 source : JC9 19) chain 0 residue 66 type sequence C description BINDING SITE FOR RESIDUE ZN 0 100 source : KC1 20) chain 0 residue 69 type sequence C description BINDING SITE FOR RESIDUE ZN 0 100 source : KC1 21) chain 0 residue 82 type sequence C description BINDING SITE FOR RESIDUE ZN 0 100 source : KC1 22) chain 0 residue 88 type sequence H description BINDING SITE FOR RESIDUE ZN 0 100 source : KC1 23) chain Q residue 2 type MOD_RES sequence S description N-acetylserine => ECO:0007744|PubMed:22814378 source Swiss-Prot : SWS_FT_FI1 24) chain B residue 331-342 type prosite sequence PTVRGVAMNKCD description RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGVAmNKcD source prosite : PS00467 25) chain Q residue 66-83 type prosite sequence GDRVVVMSGASKGNIAVI description RIBOSOMAL_L24 Ribosomal protein L24 signature. GDrVvVMsGasKGni.AvI source prosite : PS01108 26) chain K residue 209-220 type prosite sequence KKPSKKYLNILK description RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. KKpSKKYLNILK source prosite : PS00586 27) chain K residue 127-138 type prosite sequence RMGKGKGGFDHW description RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGkGKGgfdhW source prosite : PS00701 28) chain F residue 191-199 type prosite sequence PEPYGKGI description RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGI source prosite : PS00525 29) chain U residue 22-54 type prosite sequence IVKSLGLGKRGSIVYKKVNPAIAGSLAKVKELV description RIBOSOMAL_L30 Ribosomal protein L30 signature. IVksLgLgKrgSiVykkvnpaiagSLakVkeLV source prosite : PS00634 30) chain I residue 71-98 type prosite sequence AIVVRSKQRNMCRKDGSTVAFGDTACVL description RIBOSOMAL_L14 Ribosomal protein L14 signature. AIVVrskqrnmcrkDGstvaFgdTacVL source prosite : PS00049 31) chain H residue 109-131 type prosite sequence VSGMLPKNKLRKQRLDRLKVFDG description RIBOSOMAL_L13 Ribosomal protein L13 signature. VSGMLPknkl.RKqrldrLkVFdG source prosite : PS00783 32) chain L residue 33-55 type prosite sequence IVSTHAKCKEASRVAERIITWTK description RIBOSOMAL_L17 Ribosomal protein L17 signature. IvSThaKcKeasrvaErIITwTK source prosite : PS01167 33) chain C residue 160-183 type prosite sequence FKEGQYVDVRSVSKGKGFTGVMKR description RIBOSOMAL_L3 Ribosomal protein L3 signature. FkegqyvDvrSvSkGKGftGvmkR source prosite : PS00474 34) chain 0 residue 66-92 type prosite sequence CSDCYLVRRKGRVYIYCKSNKKHKQRQ description RIBOSOMAL_L36 Ribosomal protein L36 signature. CsdCylVrRkgrVyIyCksnkKHkQrQ source prosite : PS00828 35) chain R residue 60-74 type prosite sequence GEIIMRQRGTKFYPG description RIBOSOMAL_L27 Ribosomal protein L27 signature. GeIImRQRGtkfypG source prosite : PS00831

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