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eF-site ID
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3j46-TUY |
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PDB Code
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3j46 |
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Chain
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T, U, Y |
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click to enlarge
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Title
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Structure of the SecY protein translocation channel in action |
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Classification
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RIBOSOME/PROTEIN TRANSPORT |
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Compound
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Protein translocase subunit SecY |
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Source
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ORGANISM_SCIENTIFIC: Escherichia coli; |
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Sequence
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T: |
MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATK
AEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDW
KKAYVTLKEGQNLDFVGGAE
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| U: |
AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINL
VKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKAD
RVGFRFEDGKKVRFFKSNSETIK
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| Y: |
MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQS
HLLKQVRRDVARVKTLLNEKAGA
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Description
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(1) |
SECY, SECE, SECG, NC100, 50S ribosomal protein L1, 50S ribosomal protein L23P, 50S ribosomal protein L24P, 50S ribosomal protein L29P
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Functional site
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1)
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chain |
T |
| residue |
1-66 |
| type |
prosite |
| sequence |
MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATK
AEIKAAVQKLFEVEVEVVNTLVVKGK
|
| description |
TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevv.........................................................NTLVVKGK
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| source |
prosite : PS00430
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2)
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chain |
Y |
| residue |
39-53 |
| type |
prosite |
| sequence |
QSHLLKQVRRDVARV
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| description |
RIBOSOMAL_L29 Ribosomal protein L29 signature. QSHLLKqVRRDVARV
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| source |
prosite : PS00579
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3)
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chain |
U |
| residue |
7-24 |
| type |
prosite |
| sequence |
DDEVIVLTGKDKGKRGKV
|
| description |
RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeViVLtGkdKGkr.GkV
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| source |
prosite : PS01108
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|
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4)
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chain |
T |
| residue |
81-96 |
| type |
prosite |
| sequence |
KKAYVTLKEGQNLDFV
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| description |
RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVTLKegqnldfV
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| source |
prosite : PS00050
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