|
eF-site ID
|
3j46-12TUY |
PDB Code
|
3j46 |
Chain
|
1, 2, T, U, Y |
|
click to enlarge
|
|
Title
|
Structure of the SecY protein translocation channel in action |
Classification
|
RIBOSOME/PROTEIN TRANSPORT |
Compound
|
Protein translocase subunit SecY |
Source
|
ORGANISM_SCIENTIFIC: Escherichia coli; |
|
Sequence
|
1: |
AAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUA
UGAACCGUUAUAACCGGCGAUUU
|
2: |
AAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGA
|
T: |
MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATK
AEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDW
KKAYVTLKEGQNLDFVGGAE
|
U: |
AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINL
VKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKAD
RVGFRFEDGKKVRFFKSNSETIK
|
Y: |
MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQS
HLLKQVRRDVARVKTLLNEKAGA
|
|
Description
|
(1) |
SECY, SECE, SECG, NC100, 50S ribosomal protein L1, 50S ribosomal protein L23P, 50S ribosomal protein L24P, 50S ribosomal protein L29P
|
|
Functional site
|
|
1)
|
chain |
T |
residue |
81-96 |
type |
prosite |
sequence |
KKAYVTLKEGQNLDFV
|
description |
RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVTLKegqnldfV
|
source |
prosite : PS00050
|
|
2)
|
chain |
T |
residue |
1-66 |
type |
prosite |
sequence |
MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATK
AEIKAAVQKLFEVEVEVVNTLVVKGK
|
description |
TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevv.........................................................NTLVVKGK
|
source |
prosite : PS00430
|
|
3)
|
chain |
Y |
residue |
39-53 |
type |
prosite |
sequence |
QSHLLKQVRRDVARV
|
description |
RIBOSOMAL_L29 Ribosomal protein L29 signature. QSHLLKqVRRDVARV
|
source |
prosite : PS00579
|
|
4)
|
chain |
U |
residue |
7-24 |
type |
prosite |
sequence |
DDEVIVLTGKDKGKRGKV
|
description |
RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeViVLtGkdKGkr.GkV
|
source |
prosite : PS01108
|
|
|
|